Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   NQZ95_RS08975 Genome accession   NZ_CP102138
Coordinates   1813610..1814251 (-) Length   213 a.a.
NCBI ID   WP_257105086.1    Uniprot ID   -
Organism   Streptococcus suis strain M102942_S11     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1808610..1819251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ95_RS08950 (NQZ95_08950) comFA/cflA 1808764..1810056 (-) 1293 WP_024394375.1 DEAD/DEAH box helicase Machinery gene
  NQZ95_RS08955 (NQZ95_08955) - 1810113..1810745 (+) 633 WP_024394374.1 YigZ family protein -
  NQZ95_RS08960 (NQZ95_08960) cysK 1810835..1811761 (+) 927 WP_029178437.1 cysteine synthase A -
  NQZ95_RS08965 (NQZ95_08965) - 1811787..1812158 (-) 372 WP_024394815.1 S1 RNA-binding domain-containing protein -
  NQZ95_RS08970 (NQZ95_08970) - 1812160..1813560 (-) 1401 WP_256788911.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  NQZ95_RS08975 (NQZ95_08975) vraR 1813610..1814251 (-) 642 WP_257105086.1 response regulator transcription factor Regulator
  NQZ95_RS08980 (NQZ95_08980) - 1814223..1815239 (-) 1017 WP_257105087.1 sensor histidine kinase -
  NQZ95_RS08985 (NQZ95_08985) liaF 1815236..1815895 (-) 660 WP_225533322.1 cell wall-active antibiotics response protein LiaF -
  NQZ95_RS08990 (NQZ95_08990) stkP 1816352..1818346 (-) 1995 WP_009909429.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  NQZ95_RS08995 (NQZ95_08995) - 1818346..1819083 (-) 738 WP_012774983.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23786.35 Da        Isoelectric Point: 4.8970

>NTDB_id=615121 NQZ95_RS08975 WP_257105086.1 1813610..1814251(-) (vraR) [Streptococcus suis strain M102942_S11]
MNTIRVILVDDHEMVRLGLKSYLNLQPDVEVVAEASDGEEGLAKALEVKPDVIVMDLVMPKMTGVEATLALLKEWPQAQI
VILTSYLDNEKIYPVLEAGARGYMLKTSSADEILAAIRKVALGEYAIETEVEKKVEHHKRHPDLHDDLTAREREILTLLA
KGYDNQRIADESFISLKTVKTHVSNILSKLAVSDRTQAVVYAFQHGLVAQEDQ

Nucleotide


Download         Length: 642 bp        

>NTDB_id=615121 NQZ95_RS08975 WP_257105086.1 1813610..1814251(-) (vraR) [Streptococcus suis strain M102942_S11]
ATGAATACGATTCGAGTGATACTGGTTGACGACCATGAGATGGTTCGTCTAGGATTGAAAAGTTACTTAAATTTACAGCC
AGATGTTGAAGTAGTTGCAGAAGCTAGTGATGGCGAGGAAGGTTTGGCTAAAGCATTAGAGGTTAAACCCGATGTTATAG
TGATGGACTTGGTTATGCCCAAGATGACTGGCGTAGAAGCAACCCTGGCCTTGCTGAAGGAATGGCCGCAAGCGCAGATT
GTCATCCTGACCTCCTACCTAGATAATGAAAAAATCTATCCTGTGCTGGAAGCAGGAGCTCGTGGTTATATGTTGAAAAC
GTCAAGTGCTGACGAAATCTTAGCAGCCATCCGCAAGGTAGCTCTTGGAGAATATGCTATTGAGACAGAAGTAGAGAAAA
AAGTAGAGCACCATAAACGCCACCCAGATTTACATGATGACTTGACAGCTCGTGAACGCGAAATCTTGACGCTGTTAGCC
AAGGGATATGATAATCAACGAATTGCAGATGAGTCCTTCATATCCTTAAAAACTGTTAAGACCCATGTTTCCAATATCTT
ATCCAAACTAGCTGTTAGCGATCGTACTCAAGCAGTTGTTTATGCTTTCCAGCATGGTTTGGTGGCGCAAGAGGACCAAT
AG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(148-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

55.072

97.183

0.535
  degU Bacillus subtilis subsp. subtilis str. 168

38.496

100

0.408