Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   LF296_RS10520 Genome accession   NZ_CP085083
Coordinates   2239518..2240225 (+) Length   235 a.a.
NCBI ID   WP_004772727.1    Uniprot ID   N9PYW4
Organism   Acinetobacter vivianii strain KJ-1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2234518..2245225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF296_RS10500 (LF296_10500) - 2234642..2235061 (-) 420 WP_272654293.1 hypothetical protein -
  LF296_RS10505 (LF296_10505) clpB 2235231..2237810 (-) 2580 WP_047428187.1 ATP-dependent chaperone ClpB -
  LF296_RS10510 (LF296_10510) - 2238074..2238874 (+) 801 WP_272654294.1 M23 family metallopeptidase -
  LF296_RS10515 (LF296_10515) - 2238947..2239369 (-) 423 WP_004772726.1 OsmC family protein -
  LF296_RS10520 (LF296_10520) crp 2239518..2240225 (+) 708 WP_004772727.1 cAMP-activated global transcriptional regulator CRP Regulator
  LF296_RS10525 (LF296_10525) - 2240429..2241205 (+) 777 WP_004772729.1 M48 family metallopeptidase -
  LF296_RS10530 (LF296_10530) - 2241287..2242159 (-) 873 WP_272654295.1 class I SAM-dependent methyltransferase -
  LF296_RS10535 (LF296_10535) - 2242254..2243774 (-) 1521 WP_272654296.1 flavin-containing monooxygenase -
  LF296_RS10540 (LF296_10540) - 2243868..2244692 (-) 825 WP_032810689.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26565.20 Da        Isoelectric Point: 4.7426

>NTDB_id=615121 LF296_RS10520 WP_004772727.1 2239518..2240225(+) (crp) [Acinetobacter vivianii strain KJ-1]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEKNPQRTAEVRTRDVCEIAEITYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENAFPEDEYDDED

Nucleotide


Download         Length: 708 bp        

>NTDB_id=615121 LF296_RS10520 WP_004772727.1 2239518..2240225(+) (crp) [Acinetobacter vivianii strain KJ-1]
ATGACTTCAAATTTTTCACAACTTAGCACTGATGCTTTATCACCAGGTCAACTACCTGAATCAGTTAAAGCGCTGCTAAA
ACGTGCTCATATTAATAGATATCCTAAACGCACCACGATTGTTGACGCTGGAACGGAATCAAAATCACTGTATTTAATAT
TAAAAGGTTCAGTGTCAATTATCTTACGTGAAGATGACGAACGTGAAATCGTAGTTGCCTACTTAAATCCAGGTGACTTC
TTTGGCGAAATGGGGCTTTTTGAAAAGAACCCTCAACGTACCGCAGAAGTACGTACACGCGATGTCTGCGAAATCGCAGA
AATCACTTACGACAATTTCCACGAGTTAAGTAAACAATATCCAGACTTAAGCTATGCTGTGTTTGCTCAACTGGTTCGCC
GTCTTAAAAACACCACACGTAAAGTGACCGATCTGGCATTTATTGATGTGTCTGGTCGTATCGCGCGTTGTTTAATTGAC
TTATCTGCTCAACCAGAGGCAATGATTCTGCCAAATGGTCGTCAGATTCGTATTACCCGTCAAGAGATTGGTCGTATTGT
CGGTTGTTCTCGTGAAATGGTTGGACGTGTCCTTAAGACACTTGAAGATCAAGGCATGATTCAAACTGACGGTAAAGCTA
TCTTAATCTTTGATGCTTCTTTGGAAGAAAATGCTTTCCCTGAAGATGAGTATGATGACGAAGATTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9PYW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

94.043

100

0.94
  crp Vibrio cholerae strain A1552

47.087

87.66

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404