Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   EL334_RS06725 Genome accession   NZ_AP019192
Coordinates   1264339..1264674 (-) Length   111 a.a.
NCBI ID   WP_232051750.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ASP0581     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1259339..1269674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL334_RS06690 (ASP0581_12570) - 1259681..1260616 (+) 936 WP_033705335.1 DHH family phosphoesterase -
  EL334_RS06695 (ASP0581_12580) - 1260712..1260954 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  EL334_RS06700 (ASP0581_12590) - 1261011..1261229 (-) 219 WP_001858989.1 hypothetical protein -
  EL334_RS06705 - 1261226..1261977 (-) 752 Protein_1265 transposase -
  EL334_RS06710 (ASP0581_12610) gdhA 1262314..1263660 (+) 1347 WP_000199564.1 NADP-specific glutamate dehydrogenase -
  EL334_RS06720 (ASP0581_12620) - 1264156..1264326 (-) 171 WP_000711942.1 hypothetical protein -
  EL334_RS06725 (ASP0581_12630) comA 1264339..1264674 (-) 336 WP_232051750.1 ATP-binding cassette domain-containing protein Regulator
  EL334_RS12625 comA 1264743..1264907 (-) 165 WP_109701449.1 hypothetical protein Regulator
  EL334_RS06730 - 1264933..1265442 (-) 510 Protein_1270 transposase -
  EL334_RS06735 (ASP0581_12650) - 1265451..1266165 (+) 715 Protein_1271 IS630 family transposase -
  EL334_RS06740 (ASP0581_12660) - 1266399..1266851 (-) 453 Protein_1272 hypothetical protein -
  EL334_RS06745 (ASP0581_12680) - 1266853..1267140 (-) 288 WP_000869754.1 hypothetical protein -
  EL334_RS06750 - 1267725..1269076 (+) 1352 WP_088804224.1 IS3-like element ISSpn4 family transposase -
  EL334_RS12630 - 1269176..1269574 (-) 399 Protein_1275 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12332.30 Da        Isoelectric Point: 9.7118

>NTDB_id=61433 EL334_RS06725 WP_232051750.1 1264339..1264674(-) (comA) [Streptococcus pneumoniae strain ASP0581]
MKFNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIQSQGCTQIIIAHRLSTIKDADIIV
VMKGGKIVESGNHKYLMTLGGEYYSLYTKRK

Nucleotide


Download         Length: 336 bp        

>NTDB_id=61433 EL334_RS06725 WP_232051750.1 1264339..1264674(-) (comA) [Streptococcus pneumoniae strain ASP0581]
ATGAAATTTAATACTATCATCTCAGAGATGGGGTCAAATATTTCAGGTGGGCAAAGGCAACGGATAGCACTGGCACGTGC
ATTAATAAATAATCCTAGTATTGTAATTTTAGATGAAGCAACTAGTGCATTAGACACTATTAATGAGGAAAGAATAACAA
AGTATATACAAAGTCAGGGTTGTACTCAAATAATTATAGCTCATAGATTGTCAACGATTAAGGATGCGGATATTATTGTT
GTAATGAAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGACTCTTGGTGGAGAGTACTACAGCTTATA
TACAAAAAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(4-42)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

48.113

95.495

0.459
  comA Streptococcus mitis SK321

48.113

95.495

0.459
  comA Streptococcus gordonii str. Challis substr. CH1

48.113

95.495

0.459
  comA Streptococcus pneumoniae D39

47.17

95.495

0.45
  comA Streptococcus pneumoniae TIGR4

47.17

95.495

0.45
  comA Streptococcus pneumoniae Rx1

47.17

95.495

0.45
  comA Streptococcus pneumoniae R6

47.17

95.495

0.45
  comA/nlmT Streptococcus mutans UA159

51.02

88.288

0.45
  rcrQ Streptococcus mutans UA159

42.727

99.099

0.423
  rcrP Streptococcus mutans UA159

44.33

87.387

0.387
  amiF Streptococcus thermophilus LMD-9

38.835

92.793

0.36
  amiF Streptococcus thermophilus LMG 18311

38.835

92.793

0.36

Multiple sequence alignment