Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   LG310_RS06840 Genome accession   NZ_CP084997
Coordinates   1397139..1397456 (+) Length   105 a.a.
NCBI ID   WP_031265988.1    Uniprot ID   -
Organism   Staphylococcus equorum strain SLM-340     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1392139..1402456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG310_RS06810 (LG310_06780) - 1392277..1392477 (+) 201 WP_002512453.1 YqgQ family protein -
  LG310_RS06815 (LG310_06785) - 1393067..1394053 (+) 987 WP_021339255.1 glucokinase -
  LG310_RS06820 (LG310_06790) - 1394053..1394376 (+) 324 WP_021339254.1 MTH1187 family thiamine-binding protein -
  LG310_RS06825 (LG310_06795) - 1394378..1395001 (+) 624 WP_404340352.1 MBL fold metallo-hydrolase -
  LG310_RS06830 (LG310_06800) comGA 1395101..1396075 (+) 975 WP_021339253.1 competence type IV pilus ATPase ComGA Machinery gene
  LG310_RS06835 (LG310_06805) comGB 1396047..1397114 (+) 1068 WP_021339252.1 competence type IV pilus assembly protein ComGB -
  LG310_RS06840 (LG310_06810) comGC 1397139..1397456 (+) 318 WP_031265988.1 competence type IV pilus major pilin ComGC Machinery gene
  LG310_RS06845 comGD 1397434..1397880 (+) 447 WP_031265987.1 competence type IV pilus minor pilin ComGD -
  LG310_RS06850 (LG310_06815) comGF 1397867..1398580 (+) 714 WP_021339249.1 competence type IV pilus minor pilin ComGF -
  LG310_RS06855 (LG310_06820) - 1398787..1399260 (+) 474 WP_236593604.1 shikimate kinase -
  LG310_RS06860 (LG310_06825) gcvT 1399439..1400530 (+) 1092 WP_021339246.1 glycine cleavage system aminomethyltransferase GcvT -
  LG310_RS06865 (LG310_06830) gcvPA 1400548..1401900 (+) 1353 WP_021339245.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11682.76 Da        Isoelectric Point: 9.0676

>NTDB_id=614316 LG310_RS06840 WP_031265988.1 1397139..1397456(+) (comGC) [Staphylococcus equorum strain SLM-340]
MKNLKKLFNKEAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQTAGCEAQIKMINSQIEAYSLKYNKKPTSIDELVSEG
YINESQKRCKTGSTISINNGEAVAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=614316 LG310_RS06840 WP_031265988.1 1397139..1397456(+) (comGC) [Staphylococcus equorum strain SLM-340]
TTGAAAAACTTAAAAAAACTATTTAATAAAGAAGCATTTACACTTATAGAAATGTTGCTTGTTTTATTAATCATAAGTTT
ATTGCTTATTTTAATCATACCTAACATTGCAAAACAATCATCACATATACAAACTGCTGGTTGTGAAGCTCAAATAAAAA
TGATAAACAGTCAAATTGAAGCTTATTCATTAAAATATAATAAAAAGCCAACATCAATCGATGAACTCGTCTCAGAAGGA
TATATTAACGAAAGTCAAAAGCGATGTAAAACTGGTTCGACAATTTCAATAAATAATGGTGAAGCAGTTGCTAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

69.608

97.143

0.676
  comGC Staphylococcus aureus N315

69.608

97.143

0.676
  comYC Streptococcus gordonii str. Challis substr. CH1

44.444

100

0.457
  comGC Bacillus subtilis subsp. subtilis str. 168

41.489

89.524

0.371
  comGC/cglC Streptococcus mitis NCTC 12261

41.489

89.524

0.371
  comYC Streptococcus mutans UA140

44.186

81.905

0.362
  comYC Streptococcus mutans UA159

44.186

81.905

0.362