Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LG653_RS03840 Genome accession   NZ_CP084921
Coordinates   787245..788732 (-) Length   495 a.a.
NCBI ID   WP_005804030.1    Uniprot ID   -
Organism   Acinetobacter pittii strain CEP14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 782245..793732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG653_RS03810 (LG653_03810) - 782274..782462 (+) 189 WP_002121272.1 hypothetical protein -
  LG653_RS03815 (LG653_03815) - 782501..783313 (+) 813 WP_017481901.1 TorF family putative porin -
  LG653_RS03820 (LG653_03820) - 783356..784234 (-) 879 WP_017481902.1 dihydrodipicolinate synthase family protein -
  LG653_RS03825 (LG653_03825) - 784250..785026 (-) 777 WP_005804025.1 aldolase -
  LG653_RS03830 (LG653_03830) mocR 785138..786571 (+) 1434 WP_005804027.1 PLP-dependent aminotransferase family protein -
  LG653_RS03835 (LG653_03835) yieF 786596..787141 (-) 546 WP_005804029.1 NADPH-dependent FMN reductase -
  LG653_RS03840 (LG653_03840) comM 787245..788732 (-) 1488 WP_005804030.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LG653_RS03845 (LG653_03845) - 788798..789025 (-) 228 WP_002121136.1 accessory factor UbiK family protein -
  LG653_RS03850 (LG653_03850) glnK 789304..789642 (+) 339 WP_000780326.1 P-II family nitrogen regulator -
  LG653_RS03855 (LG653_03855) amtB 789700..791094 (+) 1395 WP_005804034.1 ammonium transporter -
  LG653_RS03860 (LG653_03860) nrdR 791219..791677 (+) 459 WP_000543541.1 transcriptional regulator NrdR -
  LG653_RS03865 (LG653_03865) ribD 791693..792778 (+) 1086 WP_005804038.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54486.57 Da        Isoelectric Point: 7.3646

>NTDB_id=614079 LG653_RS03840 WP_005804030.1 787245..788732(-) (comM) [Acinetobacter pittii strain CEP14]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAVGILIASGQLPENCAEDFELIGELALDGHVRLVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL
KEVCDHFLGMKSLSSIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTAVRQRVIYAYEQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=614079 LG653_RS03840 WP_005804030.1 787245..788732(-) (comM) [Acinetobacter pittii strain CEP14]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCGCCTCTGATTGAAGTTGAGGTACATGTGAGTCA
AGGTTTACCTTCTCTTACTATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGGGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAATTTCCAACTAAAAGATTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGTTCACGT
CTAGATTTACCTATTGCTGTAGGTATTTTAATTGCTTCTGGCCAGCTCCCAGAAAACTGCGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCTTTAGATGGCCATGTAAGGCTAGTGTCAGGCACTTTAACTTTGGCAATGGCATGTCAACAGGCCAAGC
ATAAAATGCTTTTACCTCTCGATAACAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCAGTGAGCCATTTA
AAAGAAGTTTGTGATCATTTCTTGGGCATGAAATCACTATCTTCGATTGAACCTGCAACGACCTCAAACCAAATGCCTTA
TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGGCACTCGC
TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCTTCACGTCTTCCTTCAATTTTGCCACCGCTTTCTAAT
CAGGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCGCATACCTTTGGTCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCCATTGCACTAGTTGGGGGCGGCTCGCATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG
GCGTTTTGTTTTTAGATGAACTCCCTGAGTTTGATAGAAAAGTTCTAGAGGTCTTACGTCAGCCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCTTGTCCATG
TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCGCCAGAGAGTATCAAGCGCTATCAAAACCGTATATCGGGAC
CATTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAGGAACTGCAAGATCCAACACCTGCTGAA
GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT
TTCACCGAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAACAACGTTTGA
ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACCATTGCCGATTTGGCGCAAAGTGAGATGATCCAA
AGTCCTCATCTTACAGAAGCGCTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.806

100

0.509
  comM Glaesserella parasuis strain SC1401

49.9

100

0.503
  comM Legionella pneumophila str. Paris

49.398

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.398

100

0.497
  comM Haemophilus influenzae Rd KW20

48.697

100

0.491
  comM Vibrio campbellii strain DS40M4

47.677

100

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.467