Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LHK94_RS10915 Genome accession   NZ_CP084740
Coordinates   2434653..2436179 (-) Length   508 a.a.
NCBI ID   WP_012886520.1    Uniprot ID   D2BYU3
Organism   Dickeya zeae strain A586-S18-A17     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2429653..2441179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHK94_RS10905 (LHK94_10910) hdfR 2433305..2434132 (-) 828 WP_210182664.1 HTH-type transcriptional regulator HdfR -
  LHK94_RS10910 (LHK94_10915) - 2434252..2434590 (+) 339 WP_012886521.1 DUF413 domain-containing protein -
  LHK94_RS10915 (LHK94_10920) comM 2434653..2436179 (-) 1527 WP_012886520.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LHK94_RS10920 (LHK94_10925) - 2436527..2437750 (+) 1224 WP_210182662.1 MFS transporter -
  LHK94_RS10925 (LHK94_10930) ilvL 2437883..2437981 (+) 99 WP_071526243.1 ilv operon leader peptide -
  LHK94_RS10930 (LHK94_10935) ilvG 2438121..2439767 (+) 1647 WP_226509990.1 acetolactate synthase 2 catalytic subunit -
  LHK94_RS10935 (LHK94_10940) ilvM 2439803..2440060 (+) 258 WP_012886517.1 acetolactate synthase 2 small subunit -
  LHK94_RS10940 (LHK94_10945) ilvE 2440084..2441010 (+) 927 WP_012886516.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55533.12 Da        Isoelectric Point: 7.9065

>NTDB_id=613022 LHK94_RS10915 WP_012886520.1 2434653..2436179(-) (comM) [Dickeya zeae strain A586-S18-A17]
MTLAVTYTRATIGMQAPEVSIEVHISNGLPALTLVGLPETTVKEARDRVRSALINSGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIAGEKLAQYEFLGELGLSGSLRGVHGAIPAAMEAQKVGRGLILPEDNKLEMTLIPHGDTLLANHL
LQVCAFLQGETALLRGSEIPHTISPHTSAPDLKEIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLPGLLPELN
DDEALESAAINSLIDIQPGLLQWRKRPFRSPHHTASITALVGGGVLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIVISRTRAKVCYPARFQLVAAMNPSPSGHYQGIHNRMPAQQILRYLNRLSGPFLDRFDLSIEVPLLPPGILRQQTR
IGEDSATVRARVFDARKRQLDRVGRINAQMKSDDIASYCRLNHEDATYLEEVMSKLGLSVRAWHRILKVSRTIADLGGEE
QIRRAHLSEALSYRCMDRLLIQLHKSLA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=613022 LHK94_RS10915 WP_012886520.1 2434653..2436179(-) (comM) [Dickeya zeae strain A586-S18-A17]
ATGACATTGGCAGTGACCTATACGCGAGCAACCATCGGTATGCAGGCACCGGAAGTCTCAATTGAAGTACACATCAGCAA
CGGTTTGCCGGCACTCACGCTGGTCGGTTTACCGGAAACAACGGTCAAAGAAGCACGAGACCGGGTACGCAGCGCGCTAA
TCAACAGCGGCTTTACCTTTCCAGCCAAGCGGATCACCGTCAATCTGGCTCCAGCGGATCTGCCGAAAGAAGGGGGACGT
TATGACCTTCCTATCGCGCTAGCCATTCTGGCAGCCTCTGAGCAAATTGCTGGTGAGAAACTCGCACAATATGAGTTCCT
CGGTGAACTTGGATTATCAGGCAGCCTGAGGGGCGTTCATGGCGCGATTCCTGCAGCCATGGAGGCGCAAAAGGTAGGGA
GGGGATTAATCCTGCCAGAAGACAACAAACTGGAAATGACCCTGATTCCCCACGGAGATACGCTACTGGCAAATCATCTG
CTACAAGTTTGTGCTTTTCTGCAAGGGGAGACCGCCTTGTTGCGTGGCAGCGAGATCCCTCACACCATATCCCCCCATAC
CTCAGCGCCAGACCTGAAAGAAATCATTGGCCAGGAACAAGCGAAACGTGCGTTGGAAATCGCGGCGGCAGGCGGACACA
ATTTGCTGTTACTCGGCCCACCAGGAACCGGCAAAACGATGCTGGCCAGCCGCCTGCCCGGTTTACTACCCGAGCTTAAT
GACGATGAAGCACTGGAAAGTGCAGCCATCAATAGCCTGATAGATATTCAGCCGGGTCTGTTGCAATGGCGCAAAAGGCC
ATTCCGCTCGCCTCACCATACCGCATCCATTACGGCGCTGGTTGGCGGAGGGGTGTTACCTAAGCCAGGTGAGATTTCAC
TGGCGCACAATGGCGTACTGTTTCTGGATGAACTGCCAGAATTTGAGCGGCGAGTGCTGGATTCACTGCGAGAACCGTTG
GAATCAGGAGAAATAGTGATTTCTCGCACTCGTGCCAAGGTGTGTTATCCCGCACGCTTTCAGTTAGTCGCCGCCATGAA
TCCCAGCCCGTCAGGGCACTACCAAGGCATCCATAACCGTATGCCAGCACAACAAATTCTGCGTTATCTCAACAGGCTAT
CCGGCCCTTTTCTCGATCGTTTTGATTTATCTATTGAGGTGCCATTGCTACCACCAGGTATTCTCCGACAGCAGACACGC
ATCGGGGAAGACAGCGCAACCGTAAGGGCACGGGTATTTGACGCCAGAAAACGGCAACTGGATCGCGTTGGCAGAATCAA
CGCACAAATGAAATCGGATGATATCGCCAGTTACTGTCGACTAAACCATGAGGACGCCACCTATCTGGAAGAGGTGATGA
GCAAGTTAGGATTATCAGTCAGGGCCTGGCATCGGATCCTAAAGGTTTCACGCACGATTGCGGATCTGGGAGGAGAAGAG
CAGATACGTCGCGCTCACTTATCTGAAGCGCTCAGCTATCGCTGTATGGACCGTCTGTTGATTCAACTACACAAGAGCCT
GGCATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D2BYU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.636

99.606

0.634
  comM Glaesserella parasuis strain SC1401

63.314

99.803

0.632
  comM Vibrio cholerae strain A1552

62.624

99.016

0.62
  comM Vibrio campbellii strain DS40M4

60.636

99.016

0.6
  comM Legionella pneumophila str. Paris

51.71

97.835

0.506
  comM Legionella pneumophila strain ERS1305867

51.71

97.835

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.169

100

0.463