Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LDB25_RS18520 Genome accession   NZ_CP084695
Coordinates   3679740..3680429 (-) Length   229 a.a.
NCBI ID   WP_197535984.1    Uniprot ID   -
Organism   Bacillus velezensis strain DJB5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3674740..3685429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDB25_RS18485 (LDB25_18410) fliW 3674831..3675262 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  LDB25_RS18490 (LDB25_18415) - 3675292..3675861 (-) 570 WP_003151397.1 DUF6470 family protein -
  LDB25_RS18495 (LDB25_18420) flgL 3675952..3676869 (-) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  LDB25_RS18500 (LDB25_18425) flgK 3676881..3678398 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  LDB25_RS18505 (LDB25_18430) - 3678414..3678896 (-) 483 WP_003151394.1 flagellar protein FlgN -
  LDB25_RS18510 (LDB25_18435) flgM 3678911..3679177 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LDB25_RS18515 (LDB25_18440) - 3679247..3679666 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  LDB25_RS18520 (LDB25_18445) comFC 3679740..3680429 (-) 690 WP_197535984.1 ComF family protein Machinery gene
  LDB25_RS18525 (LDB25_18450) - 3680435..3680719 (-) 285 WP_014419011.1 late competence development ComFB family protein -
  LDB25_RS18530 (LDB25_18455) comFA 3680777..3682162 (-) 1386 WP_014419012.1 DEAD/DEAH box helicase Machinery gene
  LDB25_RS18535 (LDB25_18460) - 3682270..3683118 (-) 849 WP_003151387.1 DegV family protein -
  LDB25_RS18540 (LDB25_18465) degU 3683216..3683905 (-) 690 WP_111927758.1 two-component system response regulator DegU Regulator
  LDB25_RS18545 (LDB25_18470) degS 3683982..3685145 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25250.91 Da        Isoelectric Point: 7.7729

>NTDB_id=612494 LDB25_RS18520 WP_197535984.1 3679740..3680429(-) (comFC) [Bacillus velezensis strain DJB5]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKCFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=612494 LDB25_RS18520 WP_197535984.1 3679740..3680429(-) (comFC) [Bacillus velezensis strain DJB5]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGTGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598