Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K6742_RS06940 Genome accession   NZ_CP084692
Coordinates   1489826..1491346 (-) Length   506 a.a.
NCBI ID   WP_120159889.1    Uniprot ID   A0A9Q7K057
Organism   Enterobacter mori strain BC01     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1484826..1496346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6742_RS06930 (K6742_06930) hdfR 1488518..1489339 (-) 822 WP_089599716.1 HTH-type transcriptional regulator HdfR -
  K6742_RS06935 (K6742_06935) - 1489458..1489796 (+) 339 WP_008501577.1 DUF413 domain-containing protein -
  K6742_RS06940 (K6742_06940) comM 1489826..1491346 (-) 1521 WP_120159889.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K6742_RS06945 (K6742_06945) ilvL 1491689..1491787 (+) 99 WP_001311244.1 ilv operon leader peptide -
  K6742_RS06950 (K6742_06950) ilvG 1491927..1493573 (+) 1647 WP_214595085.1 acetolactate synthase 2 catalytic subunit -
  K6742_RS06955 (K6742_06955) ilvM 1493570..1493833 (+) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  K6742_RS06960 (K6742_06960) ilvE 1493852..1494781 (+) 930 WP_014885677.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55055.99 Da        Isoelectric Point: 6.9583

>NTDB_id=612407 K6742_RS06940 WP_120159889.1 1489826..1491346(-) (comM) [Enterobacter mori strain BC01]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDEVTDVPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLIGSTSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGILRQTGIQS
ECSTNVRERVIAAQARQYARQNRLNARLDNAGIRQFCSLNGEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=612407 K6742_RS06940 WP_120159889.1 1489826..1491346(-) (comM) [Enterobacter mori strain BC01]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTGAAGGCACCGCTGATTTCCGTAGAGGTTCATTTGAGTAA
TGGGCTGCCGGGACTCACGCTTGTCGGGCTACCGGAAACGACGGTTAAAGAGGCGAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTACCCAAAGAGGGGGGACGA
TACGATTTACCTATCGCGATTGCGCTTCTCGCGGCTTCTGAGCAGCTTAATACAACCAGGCTAGGCTCGTACGAGTTCGT
GGGCGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGTGCAATATCCGGAGCGCTGGAGGCAATCCGTGCAGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAGGTGAGTCTTATTGCAGAAAAGGGATGCCTTATAGCGGGGCATCTT
CAGGAAGTGTGTGCCTGGCTGGAAGGGCGACATGAGCTGTCCGAACCGGAGGAGTGTGACGATGAGGTAACGGATGTACC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATCACGGCGGCGGGTGGACACAATCTTC
TGCTGATTGGCCCACCGGGTACGGGTAAAACCATGCTGGCGAGCAGGTTGAGTGGGTTGCTCCCACCGCTTAATAATCAT
GAAGCGCTGGAAAGCGCCGCGATATACAGCCTGATCGGTTCTACGTCGCTGCAAAAACAGTGGCGTCGACGTCCTTTTCG
TTCCCCGCATCATAGCGCTTCACTGACGGCAATGGTTGGCGGTGGGTCTATTCCGGGGCCGGGTGAGATCTCACTGGCGC
ACAATGGCATTCTGTTTCTCGATGAGCTGCCTGAATTTGAGCGCCGCGTGCTGGATGCACTGAGGGAACCCATTGAATCC
GGCGAGATACATATCTCACGCACGCGTGCCAAAATAAGCTATCCCGCCAGGTTTCAGCTCGTCGCGGCGATGAACCCCAG
CCCCACTGGACACTATCAGGGGAATCATAACCGCTGCACGCCAGAGCAGACGCTGCGCTATCTGGGAAAGCTGTCCGGCC
CGTTCCTCGATCGTTTCGATTTATCACTGGAAATCCCGCTTCCACCGCCTGGCATACTCAGGCAGACGGGTATACAGAGT
GAATGCTCTACGAATGTTCGCGAGCGGGTTATCGCGGCGCAGGCGCGACAGTATGCTCGTCAGAACAGACTGAATGCGCG
GCTGGATAATGCCGGGATCCGACAGTTTTGTTCACTTAACGGTGAGGATGCGGGGTGGCTGGAAGAGACGTTGACGCGGT
TTGGGCTGTCCATACGTGCGTGGCAGCGTCTGTTGAAAGTGGCCAGAACCATTGCTGACGTGGAGGGCTGTACTGACATT
GAAAGGAAACATTTGCAGGAAGCGCTGAGCTATCGCGCTATTGACCGTTTGCTGCTGCATCTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.153

100

0.585
  comM Vibrio campbellii strain DS40M4

58.532

99.605

0.583
  comM Glaesserella parasuis strain SC1401

57.791

100

0.579
  comM Vibrio cholerae strain A1552

58.052

99.407

0.577
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.441