Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K6742_RS04665 Genome accession   NZ_CP084692
Coordinates   1011290..1011820 (-) Length   176 a.a.
NCBI ID   WP_023310055.1    Uniprot ID   A0A7W2V7Q4
Organism   Enterobacter mori strain BC01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1006290..1016820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6742_RS04640 (K6742_04640) - 1006805..1007476 (-) 672 WP_108418087.1 glutathione S-transferase family protein -
  K6742_RS04645 (K6742_04645) soxR 1007844..1008302 (-) 459 WP_089598624.1 redox-sensitive transcriptional activator SoxR -
  K6742_RS04650 (K6742_04650) soxS 1008401..1008727 (+) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  K6742_RS04655 (K6742_04655) - 1008734..1010299 (-) 1566 WP_100167220.1 EAL domain-containing protein -
  K6742_RS04660 (K6742_04660) - 1010948..1011229 (+) 282 WP_003860282.1 YjcB family protein -
  K6742_RS04665 (K6742_04665) ssb 1011290..1011820 (-) 531 WP_023310055.1 single-stranded DNA-binding protein SSB1 Machinery gene
  K6742_RS04670 (K6742_04670) uvrA 1012072..1014894 (+) 2823 WP_108418088.1 excinuclease ABC subunit UvrA -
  K6742_RS04675 (K6742_04675) - 1014898..1015251 (-) 354 WP_023310053.1 MmcQ/YjbR family DNA-binding protein -
  K6742_RS04680 (K6742_04680) aphA 1015368..1016081 (-) 714 WP_214595072.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.81 Da        Isoelectric Point: 5.2456

>NTDB_id=612401 K6742_RS04665 WP_023310055.1 1011290..1011820(-) (ssb) [Enterobacter mori strain BC01]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=612401 K6742_RS04665 WP_023310055.1 1011290..1011820(-) (ssb) [Enterobacter mori strain BC01]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGAGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCTGAGAAGTACACCACGGAAGTCGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGACAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCCCCGTCAAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2V7Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.778
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364