Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LGL96_RS08985 Genome accession   NZ_CP084656
Coordinates   2051872..2053398 (+) Length   508 a.a.
NCBI ID   WP_103971733.1    Uniprot ID   A0A7V8T862
Organism   Pectobacterium versatile strain SR1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2046872..2058398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGL96_RS08965 (LGL96_08965) - 2048288..2049214 (-) 927 WP_014916970.1 branched-chain amino acid transaminase -
  LGL96_RS08970 (LGL96_08970) ilvM 2049240..2049500 (-) 261 WP_010294673.1 acetolactate synthase 2 small subunit -
  LGL96_RS08975 (LGL96_08975) ilvG 2049579..2051225 (-) 1647 WP_103971732.1 acetolactate synthase 2 catalytic subunit -
  LGL96_RS08980 (LGL96_08980) ilvL 2051366..2051464 (-) 99 WP_071531109.1 ilv operon leader peptide -
  LGL96_RS08985 (LGL96_08985) comM 2051872..2053398 (+) 1527 WP_103971733.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LGL96_RS08990 (LGL96_08990) - 2053456..2053794 (-) 339 WP_010283921.1 DUF413 domain-containing protein -
  LGL96_RS08995 (LGL96_08995) hdfR 2053915..2054742 (+) 828 WP_039487968.1 HTH-type transcriptional regulator HdfR -
  LGL96_RS09000 (LGL96_09000) yjfF 2054764..2055726 (-) 963 WP_095700899.1 galactofuranose ABC transporter, permease protein YjfF -
  LGL96_RS09005 (LGL96_09005) ytfT 2055726..2056736 (-) 1011 WP_103971734.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  LGL96_RS09010 (LGL96_09010) ytfR 2056723..2058243 (-) 1521 WP_103971737.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55441.04 Da        Isoelectric Point: 6.6199

>NTDB_id=612351 LGL96_RS08985 WP_103971733.1 2051872..2053398(+) (comM) [Pectobacterium versatile strain SR1]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPQIGEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTHWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLTARQIQLKRANKINALLTSREIEKHCGLEMADAAYLEEVMNKLGLSVRAWHRILKVARTIADLGDRD
NIERKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=612351 LGL96_RS08985 WP_103971733.1 2051872..2053398(+) (comM) [Pectobacterium versatile strain SR1]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCGGACGTTTATATCGAAGTTCACATCAGCAG
CGGGCTGCCGGCCCTAACGCTGGTGGGTTTACCTGAAACCACCGTCAAGGAAGCGCGGGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACCTTTCCAGCAAAGCGCATCACGGTCAATCTCGCCCCCGCAGACCTGCCAAAAGAAGGGGGACGC
TACGATCTACCGATTGCTCTGGCGATTCTGGCGGCTTCAGAACAAATTGATGGTGAAAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCCGCATTAGAAGCCATCAAGTCAGGCC
GCCAGCTTATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCGCAGGGTGAAGCGCTAATGGCCGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGCGGAGAAGAGGAATTGCTCAGTTGTTCCGACATGACGCCCGTTCCACAGATAGGGGA
AGATACGCTCGATCTGAAAGATATCATCGGTCAGGAGCAAGCTAAACGCGCGTTGGAAATCGCGGCGGCAGGCGGTCATA
ACCTGCTCTTGCTAGGGCCACCGGGAACAGGGAAAACCATGCTGGCGAGTCGATTAGGCAATCTGATGCCGCCGTTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCCATCAACAGCCTAATCAACATTGATGCCACCATGACGCACTGGCGGGCTAGGCC
ATTCAGAGCGCCTCACCATAGTTCCTCGATGGCTGCACTCGTGGGCGGAGGGTCGCTGCCCAAACCTGGAGAAATCTCGC
TCGCCCACAATGGAGTGCTGTTTCTGGATGAATTACCAGAGTTTGAGCGGCGCGTCCTGGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACGCGGGCCAAAGTATGCTACCCAGCACGCGTCCAGCTCGTTGCCGCAATGAA
TCCCAGTCCATCAGGACACTATCAGGGCATTCATAACCGATTGCCAGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTTCCTTTGCTACCACCAGGGGTTTTATCTCAGCAACATTAT
CAAGGCGAAAGTAGCGCGACGATTCGCGAACGCGTGCTGACCGCACGGCAAATACAGCTGAAGCGCGCAAATAAAATCAA
CGCACTGCTCACTTCACGCGAAATAGAAAAACACTGCGGATTGGAGATGGCTGATGCGGCCTATCTGGAAGAGGTGATGA
ACAAACTTGGCTTATCCGTACGTGCGTGGCACAGGATATTGAAAGTCGCGCGCACGATCGCTGACCTCGGCGATCGGGAC
AACATAGAGAGAAAACACCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGATTGCTCATCCAGCTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7V8T862

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.427

99.606

0.642
  comM Vibrio cholerae strain A1552

64.215

99.016

0.636
  comM Glaesserella parasuis strain SC1401

63.065

100

0.632
  comM Vibrio campbellii strain DS40M4

62.648

99.606

0.624
  comM Legionella pneumophila str. Paris

50.701

98.228

0.498
  comM Legionella pneumophila strain ERS1305867

50.701

98.228

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.304

100

0.469