Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LGL97_RS09470 Genome accession   NZ_CP084655
Coordinates   2121089..2122615 (-) Length   508 a.a.
NCBI ID   WP_225583975.1    Uniprot ID   -
Organism   Pectobacterium brasiliense strain SR10     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2116089..2127615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGL97_RS09445 (LGL97_09445) ytfR 2116244..2117764 (+) 1521 WP_225583978.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  LGL97_RS09450 (LGL97_09450) ytfT 2117751..2118761 (+) 1011 WP_039318376.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  LGL97_RS09455 (LGL97_09455) yjfF 2118761..2119723 (+) 963 WP_010294682.1 galactofuranose ABC transporter, permease protein YjfF -
  LGL97_RS09460 (LGL97_09460) hdfR 2119745..2120572 (-) 828 WP_010283922.1 HTH-type transcriptional regulator HdfR -
  LGL97_RS09465 (LGL97_09465) - 2120693..2121031 (+) 339 WP_010283921.1 DUF413 domain-containing protein -
  LGL97_RS09470 (LGL97_09470) comM 2121089..2122615 (-) 1527 WP_225583975.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LGL97_RS09475 (LGL97_09475) ilvL 2123023..2123121 (+) 99 WP_071531109.1 ilv operon leader peptide -
  LGL97_RS09480 (LGL97_09480) ilvG 2123262..2124908 (+) 1647 WP_039311671.1 acetolactate synthase 2 catalytic subunit -
  LGL97_RS09485 (LGL97_09485) ilvM 2124947..2125207 (+) 261 WP_005969103.1 acetolactate synthase 2 small subunit -
  LGL97_RS09490 (LGL97_09490) - 2125233..2126159 (+) 927 WP_010283915.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55489.20 Da        Isoelectric Point: 6.7743

>NTDB_id=612324 LGL97_RS09470 WP_225583975.1 2121089..2122615(-) (comM) [Pectobacterium brasiliense strain SR10]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKAGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEQLLSCSDITPVPPIEEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGVHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIEKYCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGGRD
NIERKHLAEALSYRCMDRLLIQLHKNLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=612324 LGL97_RS09470 WP_225583975.1 2121089..2122615(-) (comM) [Pectobacterium brasiliense strain SR10]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGCGTACAAGCGCCAGACGTTTATATCGAAGTTCACATCAGCAG
TGGGCTACCGGCCCTAACGCTGGTAGGCTTACCAGAAACCACCGTCAAGGAAGCGCGCGATCGCGTGCGCAGCGCTCTCA
TCAATTGCGGATTTACGTTTCCGGCAAAGCGCATCACGGTCAATCTCGCCCCCGCAGACCTGCCAAAAGAAGGAGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATCGATGGTGAGAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGTCTGTCTGGCACCTTACGTGGAGTTAATGGCGCGATTCCCGCCGCATTGGAAGCCATAAAAGCAGGTC
GCCAGCTTATCCTGCCAGATGACAATAAACGGGAGATGACCCTGATACCACAGGGTGAAGCGCTGATGGCCGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGTGGAGAAGAGCAATTGCTCAGTTGCTCCGACATAACGCCCGTTCCACCGATCGAAGA
AGATACGCTCGATCTGAAGGATATCATCGGTCAGGAACAAGCTAAACGCGCGTTGGAAATCGCGGCGGCAGGCGGCCACA
ACTTGCTCTTGCTAGGGCCCCCGGGAACCGGGAAAACCATGCTAGCAAGTCGATTAGGCAATCTGATGCCACCATTAAGC
GATGAAGAAGCACTAGAAAGCGCCGCCATCAACAGCCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGCCAGACC
ATTCAGAGCACCTCACCATAGTTCCTCTATGGCTGCGCTCGTGGGCGGAGGGTCGTTGCCTAAACCGGGGGAAATTTCAC
TCGCCCACAACGGTGTACTATTTTTGGACGAATTACCGGAGTTTGAGCGACGCGTACTAGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACTCGGGCTAAGGTGTGCTACCCAGCACGGGTGCAGCTCGTTGCTGCAATGAA
TCCCAGCCCGTCAGGCCACTATCAGGGCGTTCATAACCGGTTGCCGGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTCCCTTTACTACCACCAGGGGTTTTGTCTCAGCAACATTAT
CAAGGCGAAAGCAGCGCGACAATTCGCGAGCGCGTGCTGATCGCACGGCAGATACAGTTGAAACGGGCAAATAAAATCAA
CGCACTACTCACTTCACGTGAAATAGAAAAATACTGCGGATTGGAGATGGCTGATGCGACCTATTTGGAAGAGGTAATGA
ACAAACTTGGCTTATCCGTACGTGCATGGCACAGGATATTGAAAGTCGCGCGCACGATCGCTGACCTCGGCGGTCGGGAT
AATATTGAAAGAAAACACCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGCTTGCTCATCCAGCTCCACAAAAACCT
TGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.229

99.606

0.64
  comM Vibrio cholerae strain A1552

64.612

99.016

0.64
  comM Glaesserella parasuis strain SC1401

63.654

100

0.638
  comM Vibrio campbellii strain DS40M4

63.043

99.606

0.628
  comM Legionella pneumophila str. Paris

50.701

98.228

0.498
  comM Legionella pneumophila strain ERS1305867

50.701

98.228

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.408

100

0.47