Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NPX81_RS20325 Genome accession   NZ_CP101866
Coordinates   4167297..4167833 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain LP5-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4162297..4172833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPX81_RS20305 (NPX81_20320) soxR 4164025..4164489 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  NPX81_RS20310 (NPX81_20325) soxS 4164575..4164898 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  NPX81_RS20315 (NPX81_20330) pdeC 4164901..4166487 (-) 1587 WP_000019542.1 c-di-GMP phosphodiesterase PdeC -
  NPX81_RS20320 (NPX81_20335) yjcB 4166917..4167198 (+) 282 WP_040064531.1 YjcB family protein -
  NPX81_RS20325 (NPX81_20340) ssb 4167297..4167833 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NPX81_RS20330 (NPX81_20345) uvrA 4168088..4170910 (+) 2823 WP_040064530.1 excinuclease ABC subunit UvrA Machinery gene
  NPX81_RS20335 (NPX81_20350) yjbR 4170945..4171301 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  NPX81_RS20340 (NPX81_20355) yjbQ 4171305..4171721 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NPX81_RS20345 (NPX81_20360) aphA 4171832..4172467 (-) 636 Protein_3992 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=612083 NPX81_RS20325 WP_000168305.1 4167297..4167833(-) (ssb) [Escherichia coli strain LP5-1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=612083 NPX81_RS20325 WP_000168305.1 4167297..4167833(-) (ssb) [Escherichia coli strain LP5-1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACTGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGCGGCGCTCCGGCAGGTGGTAATATCGGTGGCGGTCAGCCACAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489