Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LGO15_RS24020 Genome accession   NZ_CP084622
Coordinates   4787243..4787728 (-) Length   161 a.a.
NCBI ID   WP_079505977.1    Uniprot ID   -
Organism   Mesobacillus sp. S13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4782243..4792728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGO15_RS24000 rplI 4783375..4783824 (-) 450 WP_167830969.1 50S ribosomal protein L9 -
  LGO15_RS24005 - 4783821..4785794 (-) 1974 WP_167830968.1 DHH family phosphoesterase -
  LGO15_RS24010 - 4785825..4786766 (-) 942 WP_226086300.1 YybS family protein -
  LGO15_RS24015 rpsR 4786956..4787192 (-) 237 WP_079507585.1 30S ribosomal protein S18 -
  LGO15_RS24020 ssbA 4787243..4787728 (-) 486 WP_079505977.1 single-stranded DNA-binding protein Machinery gene
  LGO15_RS24025 rpsF 4787807..4788094 (-) 288 WP_167830966.1 30S ribosomal protein S6 -
  LGO15_RS24030 ychF 4788347..4789447 (-) 1101 WP_167830965.1 redox-regulated ATPase YchF -
  LGO15_RS24035 - 4790033..4792033 (-) 2001 WP_226086301.1 molybdopterin-dependent oxidoreductase -
  LGO15_RS24040 - 4792121..4792315 (-) 195 WP_167830963.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17852.65 Da        Isoelectric Point: 4.8013

>NTDB_id=612038 LGO15_RS24020 WP_079505977.1 4787243..4787728(-) (ssbA) [Mesobacillus sp. S13]
MMNRVILVGRLTKDPELRFTPNGVAVATFTLAVNRSFTNQQGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRVQTR
SYEGQDGKRVYVTEVLAESVQFLEPKGQSSDRGDSGYSRQNDQGSPFGNQNQRQNQGYTKVDEDPFAGGGQIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=612038 LGO15_RS24020 WP_079505977.1 4787243..4787728(-) (ssbA) [Mesobacillus sp. S13]
ATGATGAATCGTGTCATTCTTGTTGGCCGTTTGACCAAGGATCCTGAATTACGTTTCACACCGAATGGAGTTGCGGTGGC
TACTTTCACACTTGCGGTAAATCGTTCATTTACCAACCAGCAGGGGGAAAGAGAAGCTGACTTCATCAACTGTGTGGTAT
GGCGCCGTCCAGCCGAAAACGTTGCTAACTTCTTGAAGAAGGGAAGCCTTGCAGGTGTTGATGGACGCGTTCAAACTCGC
AGCTATGAAGGACAAGATGGTAAGCGTGTTTACGTTACAGAAGTTCTTGCTGAGAGTGTTCAGTTCCTTGAGCCAAAAGG
ACAGTCTTCAGACAGAGGGGATAGCGGTTATTCCCGTCAAAATGATCAAGGATCCCCATTCGGGAATCAGAATCAACGAC
AAAACCAAGGTTATACAAAAGTAGATGAGGATCCATTTGCAGGTGGCGGCCAGATCGACATTTCAGATGATGATCTTCCA
TTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.714

100

0.758
  ssb Latilactobacillus sakei subsp. sakei 23K

55.294

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

65.839

0.422
  ssbB Streptococcus sobrinus strain NIDR 6715-7

49.18

75.776

0.373
  ssbB/cilA Streptococcus pneumoniae TIGR4

50

72.05

0.36