Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   XVT_RS19655 Genome accession   NZ_CP084548
Coordinates   4593662..4595182 (+) Length   506 a.a.
NCBI ID   WP_005914377.1    Uniprot ID   A0A1T1NZH8
Organism   Xanthomonas citri pv. viticola strain LMG 965     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4588662..4600182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XVT_RS19635 (XVT_19655) - 4589506..4590162 (+) 657 WP_005922454.1 RIO1 family regulatory kinase/ATPase -
  XVT_RS19640 (XVT_19660) - 4590366..4592351 (-) 1986 WP_033484832.1 beta-N-acetylglucosaminidase domain-containing protein -
  XVT_RS19645 (XVT_19665) - 4592836..4593210 (-) 375 WP_191480812.1 P-II family nitrogen regulator -
  XVT_RS19650 (XVT_19670) - 4593365..4593646 (+) 282 WP_003486493.1 accessory factor UbiK family protein -
  XVT_RS19655 (XVT_19675) comM 4593662..4595182 (+) 1521 WP_005914377.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  XVT_RS19660 (XVT_19680) - 4595531..4596040 (+) 510 WP_015471471.1 lipocalin family protein -
  XVT_RS19665 (XVT_19685) - 4596285..4596461 (-) 177 WP_003486502.1 hypothetical protein -
  XVT_RS19670 (XVT_19690) - 4596844..4598406 (+) 1563 WP_033484833.1 EAL domain-containing protein -
  XVT_RS19675 (XVT_19695) - 4598472..4599593 (-) 1122 WP_003486507.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53867.58 Da        Isoelectric Point: 8.3399

>NTDB_id=611848 XVT_RS19655 WP_005914377.1 4593662..4595182(+) (comM) [Xanthomonas citri pv. viticola strain LMG 965]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LDVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLSHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTIARAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHIEVPRLPPQALRSGN
LGEDSASVRARVVAARQRQLARGALPNAQLDQADTDRHCRLQHDDQVLLERAIEQLQLSARSMHRILRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALGAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=611848 XVT_RS19655 WP_005914377.1 4593662..4595182(+) (comM) [Xanthomonas citri pv. viticola strain LMG 965]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGGCTTCCCTCTACCCAGATCGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAGCGCGTACGCGCTGCCCTGC
TATGCGCACAGTTCGAATTCCCCGCCCGGCGCATCACCATCAACCTGGCACCGGCTGATCTACCGAAAGAAGGCGGCCGG
TTCGATCTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGTGGTGTCGACGGCGTGCTGCCCGCGGCGCTGGCGGCCGCACAGGCCGGGC
GACGGCTGATCGTCCCGCTCGCCAACGGTGCCGAAGCCGCCATCGCCGGGCACGTCGAAGCCTTCACCGCGCGCACCCTG
CTGGACGTCTGCGCCACGCTCAACGGCAGCCAGAAAGCGCCCGCCGCCGAGCTGGCAGTGCAGGCGCTCGGCGCACGCGC
CCTGCCCGATATGGCCGACGTGCGCGGGCAACCGCACGCACGTCGCGCGCTGGAAATCGCCGCTGCCGGTGGGCACCATC
TGTTGCTGGTCGGCAGCCCCGGTTGCGGCAAGACGCTGCTGGCTTCGCGCCTGCCTGGTCTATTGCCCGAAGCCAGCGAA
GCAGAAGCACTGGAAACCGCTGCAATCACCTCGATCAGCGGCCGTGGGCTGGATCTGGCCCGCTGGCGGCAACGGCCGTA
CCGCGCCCCGCATCACACCGCCAGCGCAGTGGCCCTGGTCGGCGGCGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGT
CTCACAACGGCGTGCTGTTCCTGGACGAATTGCCCGAATGGCAACGGCAAACCCTGGAAGTCTTGCGCGAGCCCTTGGAG
TCGGGCGTGGTCACGATCGCGCGCGCGGCGCGCAGCGTGGATTTTCCGGCGCGCTTTCAATTGGTCGCCGCCATGAATCC
CTGCCCGTGCGGCTGGGCAGGCGATGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTACCGCAGCCGCA
TCTCCGGCCCGTTGCTGGACCGCATCGATCTGCATATCGAAGTGCCACGCCTCCCTCCGCAGGCGCTGCGCAGCGGCAAC
CTCGGTGAAGACAGCGCCAGCGTACGTGCCCGCGTGGTCGCCGCGCGACAACGACAGCTTGCACGTGGTGCGCTGCCCAA
TGCGCAACTGGACCAGGCCGACACCGACCGCCATTGCCGTCTGCAACACGACGATCAGGTGCTGCTGGAGCGCGCCATCG
AACAGCTGCAGCTGTCCGCACGCTCGATGCATCGCATCCTGCGCGTTGCGCGCACCATCGCCGATCTCGACGACAGCGCG
GACATCGCCACACGCCATCTCACCGAAGCGATCGGCTATCGCAAACTGGATCGTGCGCTTGGCGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T1NZH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.522

100

0.565
  comM Haemophilus influenzae Rd KW20

55.382

100

0.559
  comM Glaesserella parasuis strain SC1401

54.241

100

0.543
  comM Vibrio campbellii strain DS40M4

53.755

100

0.538
  comM Legionella pneumophila str. Paris

51.308

98.221

0.504
  comM Legionella pneumophila strain ERS1305867

51.308

98.221

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.472

100

0.457