Detailed information NTG0610997

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: LDJ84_RS27375
• Genome accession: NZ_CP084413
• Coordinates: 5886734..5887798 (-)
• Length: 354 a.a.
• NCBI ID: WP_024764148.1
• Uniprot ID: A0A1B8VEU1
• Organism: Pseudomonas sp. HS-18
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5881734..5892798

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDJ84_RS27350 (LDJ84_27350)	aroK	5882263..5882754 (-)	492	WP_052239087.1	shikimate kinase AroK	-
LDJ84_RS27355 (LDJ84_27355)	pilQ	5882790..5884919 (-)	2130	WP_065327921.1	type IV pilus secretin PilQ	Machinery gene
LDJ84_RS27360 (LDJ84_27360)	pilP	5884973..5885497 (-)	525	WP_065327922.1	type 4a pilus biogenesis lipoprotein PilP	-
LDJ84_RS27365 (LDJ84_27365)	pilO	5885494..5886144 (-)	651	WP_065327923.1	type 4a pilus biogenesis protein PilO	-
LDJ84_RS27370 (LDJ84_27370)	pilN	5886141..5886734 (-)	594	WP_065327924.1	type 4a pilus biogenesis protein PilN	-
LDJ84_RS27375 (LDJ84_27375)	comM	5886734..5887798 (-)	1065	WP_024764148.1	pilus assembly protein PilM	Machinery gene
LDJ84_RS27380 (LDJ84_27380)	-	5887984..5890416 (+)	2433	WP_065327925.1	penicillin-binding protein 1A	-
LDJ84_RS27385 (LDJ84_27385)	-	5890593..5891060 (+)	468	WP_065327926.1	hypothetical protein	-
LDJ84_RS27390 (LDJ84_27390)	-	5891054..5891548 (-)	495	WP_054911084.1	YgjP-like metallopeptidase domain-containing protein	-
LDJ84_RS27395 (LDJ84_27395)	-	5891598..5892368 (-)	771	WP_065327927.1	class I SAM-dependent methyltransferase	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37761.04 Da
• Isoelectric Point: 4.4486

>NTDB_id=610997 LDJ84_RS27375 WP_024764148.1 5886734..5887798(-) (comM) [Pseudomonas sp. HS-18]
MLGLFNKKANTLLGIDISSTSVKLLELSRSGGRYKVEAYAVEPLPPNAVVEKNIAELEGVGQALSRVVAKARTAVKTSAV
AVAGSAVITKTIEMDGGLSDDELENQLKIEADQYIPYPLEEVAIDFEVQGTSARNAERVDVLLAACRKENVEVREAALAL
AGLTAKVVDVEAYALERAFSLLGDQLGGNADELTVAVVDIGATMTTLSVLHHGRTIYTREQLFGGRQLTEEIQRRYGLSV
EEAGLAKKQGGLPDDYDSEVLQPFKDAVVQQVSRSLQFFFAAGQFNDVDYILLAGGTASIPDLDRLIQQKIGTPTLVANP
FADMVLSGKVNAGALASDAPALMIACGLAMRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=610997 LDJ84_RS27375 WP_024764148.1 5886734..5887798(-) (comM) [Pseudomonas sp. HS-18]
GTGCTAGGGCTCTTCAATAAGAAAGCGAACACGCTGCTGGGGATAGACATCAGTTCGACTTCGGTCAAACTTCTCGAATT
GAGCCGCTCTGGAGGCCGCTACAAGGTAGAGGCCTACGCTGTCGAGCCGCTCCCGCCCAATGCAGTGGTAGAAAAGAACA
TCGCTGAGCTGGAGGGTGTCGGCCAGGCGTTGTCACGTGTGGTCGCCAAGGCGCGGACCGCTGTGAAAACGTCTGCGGTC
GCGGTTGCCGGCTCGGCGGTCATCACCAAAACCATCGAGATGGACGGCGGACTCTCGGACGACGAGCTGGAAAACCAGCT
CAAGATCGAGGCCGACCAGTACATCCCCTATCCCCTCGAAGAGGTTGCCATCGACTTCGAGGTGCAAGGCACGTCCGCGC
GCAACGCAGAGCGCGTCGATGTTCTTCTTGCCGCTTGCCGCAAGGAAAACGTCGAGGTGCGCGAAGCTGCGCTGGCGCTC
GCGGGTCTGACAGCCAAGGTCGTCGACGTCGAAGCCTATGCGCTGGAGCGAGCATTCAGTCTGCTGGGAGACCAGCTGGG
CGGCAATGCCGACGAGCTCACAGTTGCGGTGGTCGATATCGGCGCCACCATGACCACGCTGAGCGTCCTGCACCACGGAC
GCACCATCTATACGCGCGAACAGCTCTTCGGTGGGCGTCAGTTGACCGAGGAAATCCAGCGTCGCTATGGCCTGTCGGTC
GAAGAAGCTGGCCTTGCCAAGAAGCAGGGCGGTCTTCCGGATGACTACGACAGCGAAGTGCTGCAACCGTTCAAGGATGC
CGTGGTCCAGCAGGTGTCCCGTTCCTTGCAGTTCTTTTTCGCCGCCGGTCAGTTCAACGATGTGGATTACATCCTGCTGG
CGGGTGGCACTGCGTCCATCCCTGACCTGGATCGCCTGATCCAGCAGAAGATCGGTACTCCGACCCTGGTGGCCAACCCG
TTCGCCGACATGGTGCTGAGCGGCAAGGTCAACGCCGGTGCGCTGGCCAGCGATGCGCCGGCGCTGATGATTGCCTGCGG
TCTGGCGATGAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

3D structure

• AlphaFold DB: A0A1B8VEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	57.345	100	0.573
pilM	Acinetobacter baumannii D1279779	57.345	100	0.573
comM	Acinetobacter baylyi ADP1	53.39	100	0.534
pilM	Legionella pneumophila strain ERS1305867	46.61	100	0.466