Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   LA387_RS05555 Genome accession   NZ_CP084377
Coordinates   1087291..1087986 (-) Length   231 a.a.
NCBI ID   WP_004259096.1    Uniprot ID   -
Organism   Lactococcus garvieae strain Lg-Granada     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1082291..1092986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA387_RS05540 - 1083006..1083743 (-) 738 WP_004259087.1 amino acid ABC transporter ATP-binding protein -
  LA387_RS05545 - 1083744..1085315 (-) 1572 WP_004259090.1 ABC transporter permease subunit -
  LA387_RS05550 covS 1085712..1087202 (-) 1491 WP_004259093.1 HAMP domain-containing histidine kinase Regulator
  LA387_RS05555 covR 1087291..1087986 (-) 696 WP_004259096.1 response regulator transcription factor Regulator
  LA387_RS05560 - 1088088..1088639 (-) 552 WP_004259099.1 YceD family protein -
  LA387_RS05565 - 1088856..1089098 (-) 243 WP_003135050.1 type B 50S ribosomal protein L31 -
  LA387_RS05570 - 1089210..1091114 (-) 1905 WP_004259108.1 PTS fructose transporter subunit IIABC -
  LA387_RS05575 pfkB 1091129..1092055 (-) 927 WP_004259111.1 1-phosphofructokinase -
  LA387_RS05580 - 1092052..1092753 (-) 702 WP_004259114.1 DeoR/GlpR family DNA-binding transcription regulator -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26979.74 Da        Isoelectric Point: 5.4730

>NTDB_id=610844 LA387_RS05555 WP_004259096.1 1087291..1087986(-) (covR) [Lactococcus garvieae strain Lg-Granada]
MNSSKRILIIEDDKNIARFVSLELEHEGYQTAVQGNGRKGLEEAMSKDYDLILLDLMLPELDGFEVARRLRREKDTHIIM
MTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRSLFRREDHIHTIEKSDNTSFRDLVIDKTNRTVHRGKKVIDLTRR
EYDLLLTLMQNVGDVVTREYLVSEVWGYEEGTETNVVDVYIRYLRNKIDVEGRESYIQTVRGMGYVMRDRK

Nucleotide


Download         Length: 696 bp        

>NTDB_id=610844 LA387_RS05555 WP_004259096.1 1087291..1087986(-) (covR) [Lactococcus garvieae strain Lg-Granada]
ATGAATTCATCTAAACGTATTTTGATTATCGAAGACGATAAAAACATTGCGAGATTTGTTTCACTTGAGCTTGAACACGA
AGGATACCAAACTGCGGTTCAAGGCAATGGTCGTAAAGGTCTTGAAGAAGCAATGTCAAAAGATTATGATTTGATTTTGC
TTGACTTAATGCTCCCAGAGCTTGATGGCTTTGAGGTTGCACGACGCTTACGCCGTGAAAAAGATACACATATTATTATG
ATGACTGCACGTGATTCGACAATGGACCGTGTAGCAGGTCTTGATATTGGCGCAGATGACTATATTACAAAACCATTTGC
TATTGAAGAATTGTTAGCGCGTGTCCGCTCACTCTTCCGTCGTGAAGATCATATCCACACGATTGAAAAGTCAGACAATA
CTTCATTCCGTGATTTGGTAATTGATAAGACCAACCGTACTGTACACCGTGGAAAAAAAGTTATTGACCTTACACGCCGT
GAGTACGATTTGCTTTTGACATTGATGCAAAATGTAGGTGATGTCGTAACACGTGAATACTTGGTTTCTGAAGTATGGGG
TTACGAAGAAGGTACAGAAACAAACGTTGTGGACGTTTATATCCGTTATCTGCGTAACAAAATTGACGTGGAGGGCCGTG
AAAGCTATATCCAAACGGTTCGTGGTATGGGATATGTCATGCGTGACCGCAAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-227)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Lactococcus lactis subsp. lactis strain DGCC12653

87.773

99.134

0.87
  covR Streptococcus salivarius strain HSISS4

66.81

100

0.671
  vicR Streptococcus mutans UA159

43.723

100

0.437
  micA Streptococcus pneumoniae Cp1015

42.424

100

0.424