Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LEO79_RS09745 Genome accession   NZ_CP084350
Coordinates   2131921..2133438 (+) Length   505 a.a.
NCBI ID   WP_039039682.1    Uniprot ID   -
Organism   Aeromonas caviae strain 71442     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2126921..2138438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEO79_RS09730 (LEO79_09730) - 2128679..2129623 (-) 945 WP_039039680.1 branched-chain amino acid transaminase -
  LEO79_RS09735 (LEO79_09735) ilvM 2129636..2129893 (-) 258 WP_010676086.1 acetolactate synthase 2 small subunit -
  LEO79_RS09740 (LEO79_09740) ilvG 2129890..2131536 (-) 1647 WP_041211990.1 acetolactate synthase 2 catalytic subunit -
  LEO79_RS09745 (LEO79_09745) comM 2131921..2133438 (+) 1518 WP_039039682.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LEO79_RS09750 (LEO79_09750) - 2133571..2134470 (+) 900 WP_226044847.1 acyltransferase -
  LEO79_RS09755 (LEO79_09755) - 2134478..2135434 (+) 957 WP_226044848.1 acyltransferase -
  LEO79_RS09760 (LEO79_09760) - 2135380..2135865 (-) 486 WP_029314879.1 DUF523 domain-containing protein -
  LEO79_RS09765 (LEO79_09765) - 2135942..2136592 (-) 651 WP_029314880.1 NrtR DNA-binding winged helix domain-containing protein -
  LEO79_RS09770 (LEO79_09770) - 2136667..2137302 (+) 636 WP_042016427.1 nicotinamidase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54730.65 Da        Isoelectric Point: 7.4702

>NTDB_id=610720 LEO79_RS09745 WP_039039682.1 2131921..2133438(+) (comM) [Aeromonas caviae strain 71442]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPARYLLDHEFLGELALTGEIRPVLGVLPSVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQSAEILPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGTHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPRGSLTGKAERG
ESSQQIRERVLGARERMLSRSGKLNNLLDSREIEDVCRLSPQDAEFLEGAIQKLGLSIRAWHRILRVSRTIADLAGHATI
ERAHLIEALGYRAMDRLLSRLRGGQ

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=610720 LEO79_RS09745 WP_039039682.1 2131921..2133438(+) (comM) [Aeromonas caviae strain 71442]
ATGTCATTAGCTGTTGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTGGAGGTGCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTGGGGCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAACCTGGCCCCTGCGGATCTGCCCAAAGAGGGGGGTCGC
TTCGACCTGGCCATCGCCATCGGCATTCTCGCCGCATCCAAGCAGATACCCGCAAGATACCTGCTCGATCACGAATTTTT
AGGGGAATTGGCCCTGACGGGCGAGATCCGCCCCGTGCTTGGGGTGCTCCCCTCGGTGCTCGCCTGCCGCGACGCAGGGC
GCACCCTGCTGGTCCCACGGGAGAACGGTCCGGAGGCTTCCCTCATACAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCAGTCACCGCCTGGCTGGCGGGCCAGTACGAACTACCGCTGCCGGAACCCCAGAGCGCGGAGATCCTGCCCGACGT
GCCGGATCTGCAGGATGTGATCGGTCAGTCCCAGGCGAAGCGGGCGCTGGAGATCGCCGCAGCTGGCAGCCACAACCTGC
TGTTCATCGGCCCCCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGTCTGCCCGGCATTCTGCCACCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCCCGCGCCGGCCACTGGCACCACAGGCCGTATCG
CACGCCCCATCACAGCGCCTCGGCGGTGGCGCTGGTGGGCGGGGGTACCCATCCCAGGCCTGGCGAAATTTCCCTCGCCC
ACAACGGGGTACTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAAACC
GGGCACATCACCATCAGTCGTGCCGCCCGCCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGTGCCATGAATCCCAG
CCCCTGCGGCCATTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTATCTGGGCAAGCTCTCCGGCC
CCTTTCTCGACCGGTTCGATCTGACGGTAGAGGTCCCGCTCTTGCCCAGGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAATCGAGCCAGCAGATACGCGAACGGGTGCTGGGGGCGCGAGAGCGCATGCTGAGTCGCAGCGGAAAACTCAATAACCT
GCTGGATAGTCGTGAAATCGAAGATGTTTGCAGATTATCGCCACAGGATGCCGAGTTTCTGGAAGGTGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATCGCCGATCTGGCGGGGCACGCCACCATC
GAGAGAGCCCATCTGATCGAAGCCCTGGGCTATCGTGCCATGGACAGGCTGTTGTCGCGGCTGCGCGGGGGCCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.745

99.406

0.634
  comM Haemophilus influenzae Rd KW20

61.373

100

0.62
  comM Vibrio campbellii strain DS40M4

61.952

99.406

0.616
  comM Glaesserella parasuis strain SC1401

60.236

100

0.606
  comM Legionella pneumophila str. Paris

51.411

98.218

0.505
  comM Legionella pneumophila strain ERS1305867

51.411

98.218

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.669

100

0.459