Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NMG40_RS03670 Genome accession   NZ_CP101325
Coordinates   761738..762235 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain LG2-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 756738..767235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMG40_RS03655 bfr 756747..757211 (+) 465 WP_003093668.1 bacterioferritin -
  NMG40_RS03660 uvrA 757282..760119 (-) 2838 WP_003118151.1 excinuclease ABC subunit UvrA Machinery gene
  NMG40_RS03665 - 760333..761721 (+) 1389 WP_003103910.1 MFS transporter -
  NMG40_RS03670 ssb 761738..762235 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  NMG40_RS03675 pchA 762324..763754 (-) 1431 WP_003118152.1 isochorismate synthase PchA -
  NMG40_RS03680 pchB 763751..764056 (-) 306 WP_010793476.1 isochorismate lyase PchB -
  NMG40_RS03685 pchC 764056..764811 (-) 756 WP_010793475.1 pyochelin biosynthesis editing thioesterase PchC -
  NMG40_RS03690 pchD 764808..766451 (-) 1644 WP_003118945.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=610501 NMG40_RS03670 WP_003114685.1 761738..762235(+) (ssb) [Pseudomonas aeruginosa strain LG2-2]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=610501 NMG40_RS03670 WP_003114685.1 761738..762235(+) (ssb) [Pseudomonas aeruginosa strain LG2-2]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515