Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LDO52_RS01000 Genome accession   NZ_CP084300
Coordinates   220846..222411 (-) Length   521 a.a.
NCBI ID   WP_005169018.1    Uniprot ID   N9KWM5
Organism   Acinetobacter pseudolwoffii strain XMC5X702     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 215846..227411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO52_RS00985 (LDO52_00985) gpmI 216654..218201 (+) 1548 WP_225553522.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  LDO52_RS00990 (LDO52_00990) - 218233..219405 (+) 1173 WP_225553524.1 S41 family peptidase -
  LDO52_RS00995 (LDO52_00995) pilR 219406..220830 (-) 1425 WP_225553526.1 sigma-54-dependent transcriptional regulator Regulator
  LDO52_RS01000 (LDO52_01000) pilS 220846..222411 (-) 1566 WP_005169018.1 sensor histidine kinase Regulator
  LDO52_RS01005 (LDO52_01005) - 222434..223069 (-) 636 WP_005108454.1 response regulator -
  LDO52_RS01010 (LDO52_01010) - 223289..224356 (+) 1068 WP_180000940.1 serine hydrolase -
  LDO52_RS01015 (LDO52_01015) thrC 224411..225550 (-) 1140 WP_005094446.1 threonine synthase -
  LDO52_RS01020 (LDO52_01020) - 225608..226912 (-) 1305 WP_225553529.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59533.68 Da        Isoelectric Point: 5.8567

>NTDB_id=610500 LDO52_RS01000 WP_005169018.1 220846..222411(-) (pilS) [Acinetobacter pseudolwoffii strain XMC5X702]
MAQKTNYSELNQYHLGIWYSAYRLLISTGLLLIFLLTYPELTGDYQYPQLYYYALGIGVAINTAQLFALKWIRRLIQPQL
IMIFFSDVCVLSLLTLASDGPNLQIGLLFVITIFSASLLLDAKKALVVTLIAVISVIYQHFIGSIFAFSSLSNISNSALL
AFLFFVVYGTGQIAVRRFQILENLNFSQSLELYRLQNINRYILEQIETGYLVLDENYHVVLSNPAACTLLGIEAKFAHEK
FTLYQSQPDLFELIQFETLENGERFQFESQQSRYNIHVQVQKLIVPHQTLMLLVLQDAKKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLYLDSDNEQQQVLNQMIGRQATRIDRIIQDTLNMVKNKETHPVPIHLNEFIPLFIQEDLADICD
QIQFNIDVPLLIQFDEAQFRQVLINLLRNAIRHNSADANYIQLNIHPYEHRVWIDIRDFGSGVAIHDQALLFQPFFSTSI
SGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRITV

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=610500 LDO52_RS01000 WP_005169018.1 220846..222411(-) (pilS) [Acinetobacter pseudolwoffii strain XMC5X702]
ATGGCACAAAAAACCAATTATTCTGAACTCAATCAGTATCATTTAGGAATCTGGTATAGTGCGTATCGCCTGCTGATCAG
CACTGGCCTGCTGCTGATTTTTCTGCTGACCTACCCCGAGCTAACCGGCGATTATCAATATCCACAACTGTATTATTATG
CGCTGGGAATCGGTGTTGCCATTAATACAGCGCAGCTGTTCGCACTGAAATGGATCAGACGCCTGATCCAGCCGCAGCTG
ATTATGATTTTTTTTAGCGATGTCTGCGTCTTAAGTTTACTGACTTTGGCAAGTGACGGGCCTAATCTGCAAATTGGTTT
GCTGTTTGTGATTACCATCTTTTCTGCATCGTTATTGCTGGATGCAAAAAAAGCTTTGGTGGTCACCCTGATTGCTGTGA
TTAGTGTCATATATCAACATTTTATCGGCAGTATTTTTGCATTTTCTTCCTTAAGCAATATCAGTAATAGTGCCCTGCTC
GCTTTTTTGTTCTTTGTGGTCTATGGAACCGGGCAAATTGCGGTGCGCCGTTTTCAGATTCTGGAAAACCTGAACTTTTC
GCAATCTCTGGAACTTTATCGCTTACAGAATATTAACCGTTATATTCTGGAACAGATCGAAACTGGTTATCTGGTGCTGG
ATGAAAATTATCATGTGGTCCTGAGTAACCCTGCGGCCTGTACACTGCTCGGGATCGAAGCAAAATTTGCGCATGAGAAA
TTTACCCTCTACCAGTCACAACCAGATTTATTTGAACTGATCCAGTTTGAAACGCTGGAAAATGGCGAGCGTTTTCAATT
TGAATCACAGCAAAGTCGCTATAACATTCATGTACAGGTACAAAAGCTGATTGTGCCGCATCAAACCCTGATGTTATTGG
TGTTACAGGATGCCAAAAAACTCAATCAACAGGTGCAGCAACTCAAGCTTGCTGCACTGGGCCAGCTTTCAGCCAGTATT
GCGCATGAAATTCGTAATCCATTGGCAGCTATTGTGCAGGCCAATGATTTATACCTTGACTCTGACAATGAACAACAACA
AGTACTCAACCAGATGATTGGCCGACAGGCGACCCGGATTGACCGGATTATTCAGGACACGCTGAATATGGTCAAAAATA
AAGAAACCCATCCGGTGCCGATTCATCTCAATGAATTTATCCCGTTATTTATACAGGAAGATTTGGCCGATATTTGCGAT
CAGATTCAATTTAATATTGATGTGCCGCTGCTGATTCAGTTCGATGAAGCGCAGTTCCGGCAAGTCCTGATTAACCTGCT
TCGCAATGCCATCCGTCACAATTCAGCAGATGCCAATTACATTCAGCTGAATATACATCCCTATGAACATCGGGTCTGGA
TTGATATCCGGGATTTCGGCTCAGGTGTAGCCATACACGACCAGGCCCTATTATTTCAACCTTTTTTCAGCACCTCGATT
AGTGGAACCGGATTAGGGCTGTACTTATCACATAGTTTTTGTGAAGCAAATCAGGCACAATTAAACTATATACAACAAGA
ACAGGGCGCATGCTTTCGCATTAGCTGCCAACGTATTACGGTATAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KWM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

57.426

96.929

0.557