Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LDO52_RS00995 Genome accession   NZ_CP084300
Coordinates   219406..220830 (-) Length   474 a.a.
NCBI ID   WP_225553526.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain XMC5X702     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 214406..225830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO52_RS00980 (LDO52_00980) lptG 215459..216529 (+) 1071 WP_100355203.1 LPS export ABC transporter permease LptG -
  LDO52_RS00985 (LDO52_00985) gpmI 216654..218201 (+) 1548 WP_225553522.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  LDO52_RS00990 (LDO52_00990) - 218233..219405 (+) 1173 WP_225553524.1 S41 family peptidase -
  LDO52_RS00995 (LDO52_00995) pilR 219406..220830 (-) 1425 WP_225553526.1 sigma-54-dependent transcriptional regulator Regulator
  LDO52_RS01000 (LDO52_01000) pilS 220846..222411 (-) 1566 WP_005169018.1 sensor histidine kinase Regulator
  LDO52_RS01005 (LDO52_01005) - 222434..223069 (-) 636 WP_005108454.1 response regulator -
  LDO52_RS01010 (LDO52_01010) - 223289..224356 (+) 1068 WP_180000940.1 serine hydrolase -
  LDO52_RS01015 (LDO52_01015) thrC 224411..225550 (-) 1140 WP_005094446.1 threonine synthase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 53618.79 Da        Isoelectric Point: 6.0928

>NTDB_id=610499 LDO52_RS00995 WP_225553526.1 219406..220830(-) (pilR) [Acinetobacter pseudolwoffii strain XMC5X702]
MSVEQQPLVLLVDDEEDLCTLMQMSLLRMGIRTHIAHRLQDAKKCLADHQYDACLTDLNLPDGNGLDLLEWIGHLYPALP
VAVLTAYGNMEIAIAALKAGAFDFVSKPINQKHLEQLLQKALNKPVDYSHNNPNDALEHKMLIGQSMPIQHLRITLQKIA
RSQAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHKKGSFTGAAQDKQGLIQSAHGGSLFL
DEIAELPLAMQVKLLRAVQEKRIRPLGSDTEIDVDFRVISATHQDLEALVQQGKFRQDLYFRIHVMDLTLPPLRERSQDI
LLLAEHFIQKICQEWGIANKKLTERSKEFLLEQYYPGNVRELRNIMERAITLSDEERIDLQHLQSAPLRQALNSAQEMNT
LTSEIIATDTLIAPRKLPEEGLELYLEKIEKEVLLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEEDE

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=610499 LDO52_RS00995 WP_225553526.1 219406..220830(-) (pilR) [Acinetobacter pseudolwoffii strain XMC5X702]
ATGAGTGTGGAACAACAGCCACTGGTGCTCTTGGTGGATGATGAAGAAGATTTATGCACCCTCATGCAAATGTCGTTGCT
GCGGATGGGGATTCGTACGCACATCGCACATCGTCTGCAAGATGCTAAAAAATGTCTTGCAGATCATCAATATGATGCCT
GTTTAACTGACCTGAACCTGCCCGATGGCAATGGTTTGGACTTACTGGAGTGGATTGGTCATCTCTACCCTGCACTTCCG
GTCGCGGTTCTGACCGCCTATGGCAACATGGAAATCGCGATTGCTGCACTCAAGGCCGGTGCCTTTGACTTTGTCAGCAA
ACCGATCAATCAGAAACATCTGGAACAGCTGCTACAAAAAGCGCTGAATAAACCGGTGGATTATTCCCATAATAATCCAA
ATGATGCTTTAGAACATAAAATGCTGATTGGGCAATCGATGCCGATTCAGCACTTACGTATTACCTTACAAAAAATTGCC
CGCTCACAGGCACCGGTTTTTATTACTGGTGAATCGGGAACTGGCAAGGAAGTGGTGGCCAATCTGGTCCATCGCCTGAG
CAACCGTAATGAAGGCCCATTTATTGCAATTAACTGTGGTGCGATTCCCACTGAACTGATGGAAAGCGAACTGTTTGGGC
ATAAGAAAGGCAGCTTTACTGGCGCCGCTCAGGACAAACAGGGGCTGATTCAATCGGCACATGGCGGCAGCCTGTTTCTG
GATGAAATTGCCGAATTACCACTTGCTATGCAGGTCAAACTGTTACGTGCCGTACAGGAAAAACGTATTCGTCCCCTCGG
TTCAGATACTGAAATTGATGTGGATTTCCGCGTCATCAGTGCCACGCATCAGGATCTGGAAGCCTTGGTACAACAAGGCA
AATTCCGTCAGGATTTATATTTCCGTATTCATGTGATGGATCTGACTTTACCGCCGCTGCGTGAACGGAGTCAGGATATT
CTCTTGCTGGCCGAACATTTTATTCAGAAGATTTGCCAGGAATGGGGCATTGCCAATAAAAAACTGACAGAACGCAGTAA
AGAATTTTTATTGGAACAATATTATCCGGGTAATGTTCGTGAATTGCGTAATATTATGGAACGTGCAATTACCTTGAGTG
ATGAAGAACGGATTGATCTTCAGCACCTGCAAAGTGCACCGTTACGTCAGGCTCTTAACAGCGCTCAGGAGATGAATACG
CTCACGAGCGAGATCATTGCGACTGACACCCTGATTGCCCCGAGAAAGCTCCCAGAAGAAGGCCTAGAGCTATATTTAGA
AAAGATTGAAAAAGAAGTCCTACTCAATGCGCTGAATCTAACGCACTGGAACCGCACACTGGCCGCGAAAAAGCTCGGTA
TGTCATTCCGCTCCCTACGTTATCGTTTGAAAAAGTTCGGACTGGATACTGAGGAAGACGAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-308)

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(426-466)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

73.15

99.789

0.73
  pilR Pseudomonas aeruginosa PAK

49.675

97.257

0.483