Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LDO52_RS00915 Genome accession   NZ_CP084300
Coordinates   203166..204656 (-) Length   496 a.a.
NCBI ID   WP_225553518.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain XMC5X702     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 198166..209656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO52_RS00890 (LDO52_00890) - 198831..199211 (-) 381 WP_005094497.1 hypothetical protein -
  LDO52_RS00895 (LDO52_00895) - 199312..199710 (+) 399 WP_005094494.1 MAPEG family protein -
  LDO52_RS00900 (LDO52_00900) ppa 199833..200369 (+) 537 WP_179999274.1 inorganic diphosphatase -
  LDO52_RS00905 (LDO52_00905) - 200468..201787 (-) 1320 WP_179999276.1 OprD family outer membrane porin -
  LDO52_RS00910 (LDO52_00910) - 202385..203117 (+) 733 Protein_168 TorF family putative porin -
  LDO52_RS00915 (LDO52_00915) comM 203166..204656 (-) 1491 WP_225553518.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LDO52_RS00920 (LDO52_00920) - 204723..204950 (-) 228 WP_225553520.1 accessory factor UbiK family protein -
  LDO52_RS00925 (LDO52_00925) glnK 205228..205566 (+) 339 WP_004281042.1 P-II family nitrogen regulator -
  LDO52_RS00930 (LDO52_00930) - 205626..207041 (+) 1416 WP_005094483.1 ammonium transporter -
  LDO52_RS00935 (LDO52_00935) nrdR 207181..207645 (+) 465 WP_005094481.1 transcriptional regulator NrdR -
  LDO52_RS00940 (LDO52_00940) ribD 207648..208736 (+) 1089 WP_005169044.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54518.47 Da        Isoelectric Point: 7.2273

>NTDB_id=610498 LDO52_RS00915 WP_225553518.1 203166..204656(-) (comM) [Acinetobacter pseudolwoffii strain XMC5X702]
MSFAKIYTRGLLGLRAPLIEVEVHVSSGMPSLTIVGLPEAAVRESKDRVRSAILNSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILVASGQLPENCTDDLEFIGELALDGQLRPVTGILSIAIACQHDQHQLMLPGPNAQEACQLPDFKVFAANHL
KEVCEHLAQTQCLAEIQTIPANTNHFYKCDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLASILPPLKT
QENLEVASIYSVANANHPFGQRPFRAPHHTASAVALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLEAKE
IVISRASRQITFPANFQLVAAMNPCPCGYAFNQDVRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLQAHELQDNRPTE
DSETVRQRVIAAYEIQMQRQNSLNMSLSPKQLEHYAGLDQSAQNMLELAQQKLNLSARGYHRVLRVARTIADLNHSPDIQ
SQHLSEALSYRGQQQI

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=610498 LDO52_RS00915 WP_225553518.1 203166..204656(-) (comM) [Acinetobacter pseudolwoffii strain XMC5X702]
ATGTCTTTTGCCAAAATTTATACGCGGGGCTTGCTTGGCCTGCGCGCACCTTTAATTGAAGTCGAGGTTCATGTCAGTTC
CGGCATGCCTTCCCTCACTATTGTCGGACTTCCCGAAGCCGCAGTGCGGGAAAGTAAAGACCGGGTCCGTTCTGCTATTT
TAAATAGTGGCTTTCAGTTTCCGACCAAACGTCTGACCATTAATCTGGCTCCGGCAGACCTGCCCAAAGATGGTTCACGT
CTCGACCTGCCGATTGCCCTGGGTATTTTAGTGGCCTCCGGACAGCTTCCGGAAAACTGCACCGATGATCTTGAGTTTAT
TGGAGAATTGGCTCTCGATGGTCAACTTCGCCCAGTCACAGGGATCCTGAGCATTGCGATTGCCTGTCAACATGATCAGC
ATCAACTGATGCTGCCGGGTCCGAATGCACAAGAAGCCTGCCAACTCCCGGACTTTAAGGTCTTTGCTGCCAATCATCTA
AAAGAGGTGTGTGAGCATCTTGCTCAGACGCAGTGCTTAGCAGAAATACAAACCATCCCAGCCAATACCAACCATTTTTA
TAAATGTGATCTTGCCGATGTCAAAGGCCAATTGCGGCCACGGCGTGCATTGGAAATTGCAGCAGCGGGTGGCCATTCCC
TGCTGTTTCGAGGACCACCGGGGACAGGAAAAACCTTACTCGCATCTCGATTAGCCAGTATTTTACCGCCTTTAAAAACC
CAGGAAAATCTGGAAGTTGCCAGTATTTATTCAGTCGCCAATGCCAATCATCCTTTTGGCCAGCGGCCGTTTCGAGCACC
GCATCATACTGCTTCTGCGGTTGCACTGGTCGGTGGCGGCTCACACCCCAAACCGGGTGAAATTACGCTGGCGCATTTGG
GCGTGTTATTTCTGGATGAATTGCCTGAATTTGATCGAAAGGTACTGGAAGTTTTGCGCCAACCTTTGGAGGCAAAGGAA
ATTGTGATCTCACGCGCTTCACGCCAAATCACTTTTCCAGCCAATTTTCAGCTCGTTGCAGCGATGAATCCCTGCCCTTG
CGGTTATGCCTTTAATCAGGATGTCCGCTGCCAATGTTCGCCAGAAAGCATCAAACGCTACCAGAACCGGATTTCAGGGC
CCCTGCTGGATCGGATTGATTTGCATATTGATGTACCACCATTACAGGCGCATGAATTACAGGACAATCGGCCGACAGAG
GACTCTGAAACGGTCAGACAACGCGTGATAGCAGCTTATGAGATTCAGATGCAACGGCAAAATAGCTTGAATATGAGTTT
GAGTCCAAAGCAGCTAGAACATTATGCTGGCTTGGATCAGTCTGCCCAGAATATGCTTGAACTGGCTCAACAAAAACTGA
ATTTATCAGCACGGGGTTATCATCGGGTTTTACGGGTGGCTCGAACCATTGCCGATTTAAATCATAGTCCGGATATTCAA
AGTCAACATCTTAGTGAAGCCTTGTCTTATCGGGGGCAACAGCAAATTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.102

100

0.514
  comM Legionella pneumophila str. Paris

51.21

100

0.512
  comM Legionella pneumophila strain ERS1305867

51.21

100

0.512
  comM Vibrio cholerae strain A1552

50.4

100

0.508
  comM Glaesserella parasuis strain SC1401

49.405

100

0.502
  comM Vibrio campbellii strain DS40M4

49.8

100

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.813

100

0.474