Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LDZ27_RS13460 Genome accession   NZ_CP084265
Coordinates   2872030..2873586 (+) Length   518 a.a.
NCBI ID   WP_244814558.1    Uniprot ID   -
Organism   Caballeronia sp. Lep1P3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2867030..2878586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDZ27_RS13440 gshA 2867859..2869148 (-) 1290 WP_244814555.1 glutamate--cysteine ligase -
  LDZ27_RS13445 - 2869437..2870906 (-) 1470 WP_244814556.1 ammonium transporter -
  LDZ27_RS13450 - 2870937..2871275 (-) 339 WP_014190273.1 P-II family nitrogen regulator -
  LDZ27_RS13455 - 2871674..2871934 (+) 261 WP_244814557.1 accessory factor UbiK family protein -
  LDZ27_RS13460 comM 2872030..2873586 (+) 1557 WP_244814558.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LDZ27_RS13465 - 2873952..2874548 (-) 597 WP_244814559.1 hypothetical protein -
  LDZ27_RS13470 - 2874705..2875241 (+) 537 WP_244814560.1 TlpA disulfide reductase family protein -
  LDZ27_RS13475 - 2875293..2876633 (-) 1341 WP_244814561.1 sigma-54 dependent transcriptional regulator -

Sequence

Protein


Download         Length: 518 a.a.        Molecular weight: 54539.32 Da        Isoelectric Point: 7.6267

>NTDB_id=610383 LDZ27_RS13460 WP_244814558.1 2872030..2873586(+) (comM) [Caballeronia sp. Lep1P3]
MSLAVVRSRAPAPGRAPEVVVEVHLSNGLPSFSIVGLPDLEVRESRERVRAALQNCGFDFPVSRITVNLAPADLPKESGR
FDLPVALGILAASGQIPAESLEHREFAGELSLTGALRPMRGAFAMVCGAARQYAGADARDAQAARVPQIYVPLASAAEAA
LVPGIDVYGAEDLPTLCAHLNGVPDARLRPVRAETLCAASGAASPDLADVIGHPGARRPLEVAAAGGHHLLMVGPPGAGK
SMLAARLPGLLPPMTDDEALSSAAILSASTLGFSPAQWRQRPFRAPHHSSSSVALVGGRNPPQPGEITLAHLGVLFLDEL
PEFDRKVLETLREPLEAGRITISRAAQQADFPAACQLVAAMNPCPCGWRGDPAGRCRCSPDVAARYLRKLSGPLMDRIDI
QIELPALSPAELSARSAKRGESSADVAARVSAARDVQLRRQGKTNRELDGREADDVCRLDAAGEALLRSAGERFGWSARA
HYRVLKVVRTIADLAGADAPTAAHVAEGVQYRRALSIA

Nucleotide


Download         Length: 1557 bp        

>NTDB_id=610383 LDZ27_RS13460 WP_244814558.1 2872030..2873586(+) (comM) [Caballeronia sp. Lep1P3]
ATGTCGCTTGCCGTGGTACGCAGCCGCGCGCCCGCCCCTGGGCGCGCGCCGGAAGTCGTCGTCGAAGTCCATCTGTCCAA
CGGGCTGCCGTCGTTCTCCATCGTCGGCCTGCCTGATCTCGAAGTGCGCGAAAGCCGCGAGCGCGTGCGCGCGGCGCTTC
AGAATTGCGGCTTCGACTTTCCCGTGAGCCGTATCACCGTCAATCTCGCGCCCGCCGATCTGCCGAAGGAATCGGGCCGC
TTCGACTTGCCTGTCGCGCTCGGCATCCTCGCCGCGAGCGGGCAGATTCCGGCGGAATCGCTCGAGCATCGCGAGTTCGC
GGGCGAGTTGTCGCTGACGGGCGCACTGCGTCCGATGCGCGGCGCCTTCGCGATGGTCTGCGGCGCGGCCCGGCAGTACG
CGGGCGCCGACGCACGCGACGCGCAGGCCGCGCGCGTGCCGCAAATCTACGTTCCGCTCGCAAGCGCAGCGGAAGCCGCG
CTCGTGCCGGGCATCGATGTGTACGGCGCCGAGGACCTTCCCACGCTCTGCGCTCACCTCAACGGTGTGCCGGATGCGCG
CCTGAGACCGGTGCGCGCCGAGACGCTTTGCGCGGCGAGCGGCGCGGCGTCGCCCGATCTCGCGGATGTCATCGGCCATC
CGGGTGCGCGGCGCCCGCTCGAGGTGGCGGCGGCGGGCGGGCATCATCTGCTGATGGTCGGGCCGCCCGGCGCCGGCAAG
TCGATGCTCGCCGCGCGCCTGCCCGGTCTCCTTCCGCCGATGACGGACGACGAAGCCCTGAGCTCCGCCGCGATTCTCTC
GGCGAGCACGCTCGGCTTCAGCCCGGCGCAGTGGCGGCAGCGGCCCTTTCGCGCGCCGCATCATTCGTCGAGTTCGGTCG
CGCTCGTCGGCGGGCGCAATCCGCCGCAGCCCGGCGAAATCACGCTGGCGCACCTCGGCGTTCTCTTTCTCGACGAACTC
CCCGAATTCGACCGCAAAGTGCTCGAGACGCTGCGCGAGCCGTTGGAAGCCGGGCGCATCACCATTTCGCGCGCCGCGCA
ACAAGCCGACTTCCCCGCCGCCTGCCAACTCGTCGCCGCGATGAATCCGTGTCCATGCGGATGGCGCGGCGACCCCGCCG
GCCGTTGCCGATGCTCGCCTGATGTCGCCGCGCGCTATCTGCGCAAGCTGTCAGGCCCGCTGATGGACCGCATCGACATT
CAGATCGAGTTGCCCGCGCTTTCGCCTGCGGAGTTGTCGGCGCGCAGCGCGAAGCGCGGCGAATCGAGCGCGGACGTCGC
GGCGCGCGTGTCCGCTGCGCGCGACGTGCAGTTGCGTCGGCAGGGCAAGACCAATCGCGAACTCGACGGACGCGAAGCCG
ACGACGTCTGCCGCCTCGATGCCGCCGGCGAAGCGCTATTGCGCTCGGCGGGCGAACGCTTCGGCTGGTCTGCGCGCGCG
CACTACCGGGTGCTCAAGGTCGTGCGAACCATCGCCGACCTCGCGGGCGCCGACGCGCCGACCGCCGCACACGTCGCGGA
GGGCGTGCAGTACCGGCGCGCGCTATCCATCGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(420-512)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(206-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.318

99.035

0.488
  comM Vibrio campbellii strain DS40M4

48.438

98.842

0.479
  comM Haemophilus influenzae Rd KW20

48.249

99.228

0.479
  comM Glaesserella parasuis strain SC1401

47.758

99.035

0.473
  comM Legionella pneumophila str. Paris

44.874

99.807

0.448
  comM Legionella pneumophila strain ERS1305867

44.874

99.807

0.448
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.885

97.683

0.419