Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LDZ26_RS01260 Genome accession   NZ_CP084260
Coordinates   253321..253845 (+) Length   174 a.a.
NCBI ID   WP_206467456.1    Uniprot ID   -
Organism   Caballeronia sp. SL2Y3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 248321..258845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDZ26_RS01250 uvrA 248853..251726 (-) 2874 WP_244847825.1 excinuclease ABC subunit UvrA -
  LDZ26_RS01255 - 252002..253204 (+) 1203 WP_244847826.1 MFS transporter -
  LDZ26_RS01260 ssb 253321..253845 (+) 525 WP_206467456.1 single-stranded DNA-binding protein Machinery gene
  LDZ26_RS01265 - 254305..254937 (+) 633 WP_244848816.1 response regulator transcription factor -
  LDZ26_RS01270 - 255058..255738 (+) 681 WP_244847827.1 response regulator transcription factor -
  LDZ26_RS01275 - 255831..256481 (+) 651 WP_244847829.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18139.98 Da        Isoelectric Point: 5.9603

>NTDB_id=610355 LDZ26_RS01260 WP_206467456.1 253321..253845(+) (ssb) [Caballeronia sp. SL2Y3]
MASVNKVILVGNLGADPETRYLPSGDAVANIRLATTDRYKDKASGEMKELTEWHRVAFFGRLAEIVNEYLKKGSSVYIEG
RIRTRKWTDQSGQERYSTEIVADQMQMLGGRGGAGGGDDGGYSRSAPMERSGGGGGRAPSGSGGGRAGGSGGGASRPSAP
AGGGFDDMDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=610355 LDZ26_RS01260 WP_206467456.1 253321..253845(+) (ssb) [Caballeronia sp. SL2Y3]
ATGGCATCTGTCAACAAGGTCATTCTCGTAGGCAATCTGGGCGCGGACCCGGAAACGCGCTACCTTCCGAGCGGCGACGC
CGTGGCCAACATTCGTCTCGCGACGACCGACCGCTACAAGGACAAGGCGTCCGGCGAGATGAAAGAGCTCACCGAGTGGC
ATCGTGTCGCGTTCTTCGGGCGGCTCGCTGAAATCGTCAACGAATACCTGAAGAAGGGCTCGTCGGTGTACATCGAGGGC
CGCATCCGCACGCGCAAATGGACCGATCAATCGGGACAAGAGCGTTATTCGACCGAAATCGTCGCTGACCAGATGCAAAT
GCTGGGCGGACGCGGCGGTGCCGGCGGCGGCGACGATGGCGGCTACAGCCGCAGCGCGCCGATGGAGCGCTCCGGCGGCG
GCGGAGGCCGGGCGCCTTCCGGCTCGGGCGGCGGACGCGCGGGCGGTTCCGGTGGCGGCGCGAGCCGCCCGAGCGCGCCT
GCCGGCGGCGGCTTCGACGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.366

100

0.54
  ssb Glaesserella parasuis strain SC1401

47.778

100

0.494
  ssb Neisseria gonorrhoeae MS11

43.103

100

0.431
  ssb Neisseria meningitidis MC58

42.529

100

0.425
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.571

100

0.368