Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LCH33_RS00670 Genome accession   NZ_CP084212
Coordinates   139685..141178 (+) Length   497 a.a.
NCBI ID   WP_057404319.1    Uniprot ID   -
Organism   Pseudomonas amygdali strain 35-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 134685..146178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH33_RS00635 (LCH33_000127) - 135420..136037 (+) 618 WP_057405241.1 hypothetical protein -
  LCH33_RS00640 (LCH33_000128) - 136328..137308 (-) 981 WP_054078085.1 IS5-like element ISPsy2 family transposase -
  LCH33_RS00650 (LCH33_000129) - 137628..138308 (+) 681 WP_057404317.1 hypothetical protein -
  LCH33_RS00655 (LCH33_000130) - 138676..138826 (+) 151 Protein_130 magnesium chelatase domain-containing protein -
  LCH33_RS00660 - 138819..138950 (+) 132 Protein_131 oxidoreductase -
  LCH33_RS00665 (LCH33_000131) - 138964..139506 (-) 543 WP_057404318.1 GNAT family N-acetyltransferase -
  LCH33_RS00670 (LCH33_000132) comM 139685..141178 (+) 1494 WP_057404319.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LCH33_RS00675 (LCH33_000133) - 141239..142087 (-) 849 WP_057404320.1 aminotransferase class IV -
  LCH33_RS00680 (LCH33_000134) - 142136..143023 (-) 888 WP_005778484.1 hypothetical protein -
  LCH33_RS00685 (LCH33_000135) - 143036..143971 (-) 936 WP_044295703.1 hypothetical protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53095.91 Da        Isoelectric Point: 7.7173

>NTDB_id=610098 LCH33_RS00670 WP_057404319.1 139685..141178(+) (comM) [Pseudomonas amygdali strain 35-1]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPALTLVGLPEGAVKESKDRVRSAILNSGLDFPARRITLNLAPADLPKDGGR
FDLAIALGLLAASGQVPLVALQDVECLGELALSGAIRPIQGVLPAALAARAAERTLIIPAVNAEEACLASGLRVIAVNHL
LELVAHFNGRTVIAPYQSSGLLHQPKPYPDLSEVQGQTAAKRALVIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVASQVPLTSWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYLGEPTGRCRCSTEQVQRYRNKLSGPLLDRIDLHLTVAREATALNPDPTT
SENTASAAAVVAQARERQQRRQGCANAFLDLPGLREHCALSSVDERWLETACERLTLSLRSAHRLLKVARTLADLEQVDA
ISRSHLAEALQYRPSNN

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=610098 LCH33_RS00670 WP_057404319.1 139685..141178(+) (comM) [Pseudomonas amygdali strain 35-1]
ATGTCGCTGGCTATCGTCCATAGTCGTGCCCAGGTCGGGGTGGAAGCCCCGGCGGTTACTGTTGAAGCGCATCTGGCCAA
CGGCCTGCCGGCCCTGACGCTGGTGGGGCTGCCGGAAGGGGCGGTCAAGGAGAGCAAGGACCGGGTGCGCAGTGCCATTC
TCAACTCCGGGCTGGATTTTCCGGCGCGGCGGATCACGCTCAACCTTGCGCCGGCTGATTTGCCCAAGGATGGCGGGCGG
TTTGATCTGGCGATTGCGCTGGGTTTGCTGGCTGCCAGCGGGCAGGTGCCGCTGGTTGCGTTGCAGGATGTTGAATGCCT
GGGCGAACTGGCGCTGTCGGGGGCGATTCGGCCGATTCAGGGGGTGCTGCCTGCTGCGCTGGCGGCACGTGCGGCGGAGC
GGACGCTGATCATTCCTGCGGTGAACGCTGAGGAAGCGTGTCTGGCGTCGGGGCTGCGGGTGATTGCGGTGAATCACTTG
CTGGAGCTGGTTGCGCATTTCAACGGGCGCACGGTGATTGCGCCGTATCAGTCCAGCGGCCTGCTGCATCAGCCCAAGCC
GTATCCGGACCTTAGCGAAGTGCAGGGCCAGACCGCCGCGAAGCGTGCGTTGGTGATTGCCGCTGCGGGTGCGCACAACC
TGCTGTTCAGTGGGCCACCCGGCACCGGCAAGACGCTGCTCGCCAGCCGCCTGCCGGGTTTGTTGCCGCCGCTGGACGAG
CACGAAGCGCTGGAGGTGGCGGCGATTCAGTCGGTCGCCAGTCAGGTGCCGCTGACCAGTTGGCCGCAGCGGCCGTTTCG
CCAGCCACATCACTCGGCGTCCGGGCCTGCATTGGTGGGCGGTGGCAGTCGTCCGCAACCTGGCGAGATCACGTTGGCGC
ATCACGGCGTTTTATTTCTTGATGAACTGCCGGAGTTCGATCGCCGCGTGCTGGAGGTTTTACGCGAACCACTGGAGTCC
GGGCATATCGTGATTTCCCGTGCGCGGGATCGCGTGCGCTTTCCGGCGCGGTTCCAACTGGTGGCAGCGATGAACCCGTG
TCCCTGTGGATATCTTGGTGAGCCGACCGGGCGCTGCCGTTGCTCCACCGAGCAGGTGCAGCGATATCGCAACAAGCTGT
CCGGCCCGCTGCTGGACCGGATCGATCTGCACCTGACCGTTGCCCGCGAAGCCACAGCCCTCAACCCCGACCCGACCACC
AGTGAGAACACTGCAAGCGCGGCAGCGGTGGTTGCGCAGGCCAGAGAACGGCAGCAACGTCGTCAGGGCTGTGCCAATGC
GTTTCTCGACCTGCCGGGGCTGCGCGAGCACTGCGCGCTGTCCAGTGTCGATGAACGCTGGCTGGAGACGGCCTGCGAGC
GTCTGACCCTCTCATTACGTTCGGCGCATCGACTGCTGAAAGTGGCACGGACGTTGGCGGATCTGGAGCAAGTGGACGCG
ATCAGCCGCAGTCATCTGGCCGAGGCGTTGCAATATCGGCCTTCGAATAATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.747

99.598

0.545
  comM Glaesserella parasuis strain SC1401

53.4

100

0.537
  comM Vibrio campbellii strain DS40M4

53.939

99.598

0.537
  comM Haemophilus influenzae Rd KW20

53.2

100

0.535
  comM Legionella pneumophila str. Paris

49.109

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.109

100

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.618

100

0.461