Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   EL277_RS06475 Genome accession   NZ_AP018936
Coordinates   1237089..1237658 (-) Length   189 a.a.
NCBI ID   WP_078791811.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NU83127     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1232089..1242658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL277_RS06440 (SPNU_1231) - 1232421..1233356 (+) 936 WP_000401779.1 DHH family phosphoesterase -
  EL277_RS06445 (SPNU_1232) - 1233452..1233694 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  EL277_RS06450 (SPNU_1233) - 1233751..1233969 (-) 219 WP_000028150.1 hypothetical protein -
  EL277_RS06455 - 1233966..1234717 (-) 752 Protein_1230 transposase -
  EL277_RS06460 (SPNU_1235) gdhA 1235054..1236400 (+) 1347 WP_000199560.1 NADP-specific glutamate dehydrogenase -
  EL277_RS06470 (SPNU_1236) - 1236906..1237076 (-) 171 WP_000711943.1 hypothetical protein -
  EL277_RS06475 (SPNU_1237) comA/nlmT 1237089..1237658 (-) 570 WP_078791811.1 ATP-binding cassette domain-containing protein Regulator
  EL277_RS06480 - 1237684..1238487 (-) 804 Protein_1234 IS5 family transposase -
  EL277_RS12570 - 1238580..1239241 (-) 662 Protein_1235 IS66 family transposase -
  EL277_RS12575 (SPNU_1241) - 1239347..1239790 (-) 444 Protein_1236 IS66 family transposase -
  EL277_RS06505 - 1239763..1240071 (+) 309 Protein_1237 transposase -
  EL277_RS06510 (SPNU_1242) tnpB 1240226..1240549 (-) 324 WP_000152337.1 IS66 family insertion sequence element accessory protein TnpB -
  EL277_RS06515 - 1240530..1240715 (-) 186 WP_001136124.1 hypothetical protein -
  EL277_RS06525 (SPNU_1244) - 1240988..1241599 (-) 612 WP_000251935.1 V-type ATP synthase subunit D -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 21209.60 Da        Isoelectric Point: 8.4353

>NTDB_id=60994 EL277_RS06475 WP_078791811.1 1237089..1237658(-) (comA/nlmT) [Streptococcus pneumoniae strain NU83127]
MPSRLYKIDTGKVLFDGVNINQIDKKILSQNLGVVPQDSFLLNRSILDNITLKHEVTSQKIEEVCKAVQIYDEIMAMPMK
FNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIQSQGCTQIIVAHRLSTIKDADVIFVM
KGGKIVESGNHKYLMDLGGEYYSLYTKRK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=60994 EL277_RS06475 WP_078791811.1 1237089..1237658(-) (comA/nlmT) [Streptococcus pneumoniae strain NU83127]
ATACCATCAAGATTATATAAGATTGATACAGGAAAAGTTTTATTTGATGGTGTAAATATTAATCAAATAGATAAAAAAAT
ATTAAGTCAAAATTTAGGAGTAGTTCCACAGGATTCATTTTTATTGAACCGAAGTATTCTTGATAATATAACTTTAAAGC
ACGAAGTTACTTCACAAAAGATAGAGGAAGTTTGTAAAGCAGTTCAAATCTATGATGAAATCATGGCTATGCCGATGAAA
TTTAATACTATCATCTCAGAGATGGGGTCAAATATTTCAGGTGGGCAAAGGCAACGGATAGCACTGGCACGTGCATTAAT
AAATAATCCTAGTATTGTAATTTTAGATGAAGCAACTAGTGCATTAGACACTATTAATGAGGAAAGAATAACAAAGTATA
TACAAAGTCAGGGCTGTACTCAAATAATTGTAGCTCATAGATTGTCAACGATTAAGGATGCGGATGTTATTTTTGTAATG
AAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGGATCTTGGTGGAGAGTACTACAGCTTATATACAAA
AAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(4-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

42.391

97.354

0.413
  comA Streptococcus gordonii str. Challis substr. CH1

41.489

99.471

0.413
  comA Streptococcus mitis NCTC 12261

41.935

98.413

0.413
  comA Streptococcus mitis SK321

41.398

98.413

0.407
  comA Streptococcus pneumoniae D39

40.86

98.413

0.402
  comA Streptococcus pneumoniae Rx1

40.86

98.413

0.402
  comA Streptococcus pneumoniae R6

40.86

98.413

0.402
  comA Streptococcus pneumoniae TIGR4

39.785

98.413

0.392
  rcrQ Streptococcus mutans UA159

36.508

100

0.365

Multiple sequence alignment