Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NMT99_RS00140 Genome accession   NZ_CP101290
Coordinates   28458..29054 (+) Length   198 a.a.
NCBI ID   WP_003225425.1    Uniprot ID   G4NT17
Organism   Bacillus subtilis strain LjM2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23458..34054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS00110 sleL 23459..24742 (-) 1284 WP_003226788.1 glycoside hydrolase family 18 protein -
  NMT99_RS00115 yaaI 24812..25357 (-) 546 WP_003226786.1 isochorismatase family cysteine hydrolase -
  NMT99_RS00120 tadA 25443..25928 (+) 486 WP_003226784.1 tRNA adenosine(34) deaminase TadA -
  NMT99_RS00130 dnaX 26405..28096 (+) 1692 WP_029317164.1 DNA polymerase III subunit gamma/tau -
  NMT99_RS00135 ebfC 28120..28443 (+) 324 WP_003225427.1 YbaB/EbfC family nucleoid-associated protein -
  NMT99_RS00140 recR 28458..29054 (+) 597 WP_003225425.1 recombination protein RecR Machinery gene
  NMT99_RS00145 yaaL 29072..29296 (+) 225 WP_003242387.1 YaaL family protein -
  NMT99_RS00150 bofA 29363..29626 (+) 264 WP_029726362.1 sigma-K factor-processing regulator BofA -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21974.53 Da        Isoelectric Point: 5.3504

>NTDB_id=609929 NMT99_RS00140 WP_003225425.1 28458..29054(+) (recR) [Bacillus subtilis strain LjM2]
MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDVVLDFAKALVNAKRNLTYCSVCGHITDQDPCYICEDTRRDKS
VICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLL
KPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=609929 NMT99_RS00140 WP_003225425.1 28458..29054(+) (recR) [Bacillus subtilis strain LjM2]
ATGCAATATCCTGAACCAATATCAAAGCTGATTGACAGCTTTATGAAATTGCCAGGGATCGGACCGAAAACAGCGGTTCG
TCTGGCTTTTTTTGTTCTAGGTATGAAAGAAGATGTAGTATTAGATTTTGCGAAAGCATTAGTAAATGCGAAACGCAACC
TGACATATTGTTCAGTTTGCGGGCATATTACAGATCAGGACCCTTGCTATATATGTGAAGATACGCGCAGGGATAAGTCT
GTTATCTGTGTTGTGCAAGACCCTAAGGATGTTATCGCTATGGAGAAAATGAAGGAATACAACGGACAGTATCACGTTCT
TCACGGCGCTATTTCTCCAATGGACGGCATTGGACCGGAGGATATTAAAATACCAGAATTGTTAAAACGATTACAGGATG
ATCAAGTGACAGAAGTGATCCTCGCGACAAACCCTAATATAGAAGGGGAAGCAACGGCGATGTATATATCAAGGCTCCTC
AAGCCGTCTGGTATTAAGCTCTCCCGTATTGCCCACGGACTGCCCGTCGGCGGTGACTTGGAATATGCTGACGAGGTCAC
TCTTTCTAAAGCACTTGAAGGAAGACGTGAATTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NT17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

100

100

1
  recR Streptococcus pneumoniae R6

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.041

98.99

0.515