Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   I6G24_RS01430 Genome accession   NZ_CP084189
Coordinates   192815..193804 (+) Length   329 a.a.
NCBI ID   WP_023164439.1    Uniprot ID   -
Organism   Lactococcus lactis strain FDAARGOS_867     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 187815..198804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G24_RS01410 (I6G24_01405) - 187891..188727 (-) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -
  I6G24_RS01415 (I6G24_01410) - 189034..190455 (+) 1422 WP_003130403.1 NCS2 family permease -
  I6G24_RS01420 (I6G24_01415) - 190670..191494 (+) 825 WP_023164441.1 alpha/beta hydrolase -
  I6G24_RS01425 (I6G24_01420) - 191656..192741 (+) 1086 WP_023164440.1 YdcF family protein -
  I6G24_RS01430 (I6G24_01425) coiA 192815..193804 (+) 990 WP_023164439.1 competence protein CoiA Machinery gene
  I6G24_RS01435 (I6G24_01430) pepF 193867..195672 (+) 1806 WP_058220502.1 oligoendopeptidase F Regulator
  I6G24_RS01440 (I6G24_01435) - 195675..196358 (+) 684 WP_023164438.1 O-methyltransferase -
  I6G24_RS01445 (I6G24_01440) - 196512..197438 (+) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39425.98 Da        Isoelectric Point: 8.2893

>NTDB_id=609929 I6G24_RS01430 WP_023164439.1 192815..193804(+) (coiA) [Lactococcus lactis strain FDAARGOS_867]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMPHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYIPEFKQRPDLLVNDKIAIEIQCSHLSMKRLKERTENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSENR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGEGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDEIPLHKFTQIKQNINLYYENFLINFQQNSFKAVYPPRFYAIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=609929 I6G24_RS01430 WP_023164439.1 192815..193804(+) (coiA) [Lactococcus lactis strain FDAARGOS_867]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGCCTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATATTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATAAAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAAAGGACAGAGAATTATCAAGTCCACGGTTTTACGGTACTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGGAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCAGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCTTTTATTGCGCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATGAAATCCCTTTACATAAATTTACTCAAATTAAGCAGAATATTAATC
TATATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGCAGTCTATCCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

75.46

99.088

0.748
  coiA Streptococcus mitis NCTC 12261

43.789

97.872

0.429
  coiA Streptococcus pneumoniae TIGR4

43.478

97.872

0.426
  coiA Streptococcus pneumoniae Rx1

43.478

97.872

0.426
  coiA Streptococcus pneumoniae D39

43.478

97.872

0.426
  coiA Streptococcus pneumoniae R6

43.478

97.872

0.426