Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I6G24_RS01435 Genome accession   NZ_CP084189
Coordinates   193867..195672 (+) Length   601 a.a.
NCBI ID   WP_058220502.1    Uniprot ID   -
Organism   Lactococcus lactis strain FDAARGOS_867     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 188867..200672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G24_RS01415 (I6G24_01410) - 189034..190455 (+) 1422 WP_003130403.1 NCS2 family permease -
  I6G24_RS01420 (I6G24_01415) - 190670..191494 (+) 825 WP_023164441.1 alpha/beta hydrolase -
  I6G24_RS01425 (I6G24_01420) - 191656..192741 (+) 1086 WP_023164440.1 YdcF family protein -
  I6G24_RS01430 (I6G24_01425) coiA 192815..193804 (+) 990 WP_023164439.1 competence protein CoiA Machinery gene
  I6G24_RS01435 (I6G24_01430) pepF 193867..195672 (+) 1806 WP_058220502.1 oligoendopeptidase F Regulator
  I6G24_RS01440 (I6G24_01435) - 195675..196358 (+) 684 WP_023164438.1 O-methyltransferase -
  I6G24_RS01445 (I6G24_01440) - 196512..197438 (+) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -
  I6G24_RS01450 (I6G24_01445) alaS 197704..200322 (+) 2619 WP_143459996.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 70094.06 Da        Isoelectric Point: 5.0083

>NTDB_id=609930 I6G24_RS01435 WP_058220502.1 193867..195672(+) (pepF) [Lactococcus lactis strain FDAARGOS_867]
MAKNRNEIPEKLTWDLTTIYKTDKEWETELTRIKSELSLVEETDPGHLLDSAESLLTITEKMLSISQQVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVKFVEVYAFYEPEFLKISKEVYNKWLGELQKLKNYDHMFERLFAKKAHILSQKEEKLLAA
AGEIFESPSETFEIFDNADIKLPMVKNESDEMVQLTHGNYSSLMESKNREVRKAAYKALYSNYEQYQHTYAKTLQTNVKV
HNLNAQIRSYDSARQAALANNFVPEKVYDVLMEAIHQHLPLLHRYIELRKKILGITDLKMYDIYTPLSNLDYKFNYEDGV
KKAEEVLAIFGKEYKGKVKAAFEQRWIDVEENIGKRSGAYSGGSYDTNAFMLLNWQETLNDLFTLVHEMGHSMHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESKDDKERFALLNHWLDSFRGTIFRQSQFAEFEQKIHEADAAGEVLTSE
YLNSLYGEINEKYYNLAVKENPEIQYEWARIPHFYYNFYVFQYATGFAAATFLAEKVVHGSTEDRQKYLEYLKAGSSAYP
LEVIAKAGVDMESTDYLDAAFELFENRLNELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=609930 I6G24_RS01435 WP_058220502.1 193867..195672(+) (pepF) [Lactococcus lactis strain FDAARGOS_867]
ATGGCTAAGAATAGAAATGAAATTCCTGAAAAATTAACTTGGGATTTGACAACAATTTATAAAACAGATAAAGAATGGGA
AACAGAGCTAACTAGAATAAAAAGCGAACTTTCACTCGTTGAAGAGACAGACCCTGGTCATTTACTTGATTCAGCTGAAA
GTCTTCTGACAATTACCGAAAAAATGCTATCCATTTCTCAACAAGTTGAAAAACTATATGTTTATGCTTCAATGAAAAAT
GATCAAGATACCAGAGAGGCTAAATATCAGGAGTATCAATCAAAAGCAACAGCCCTCTATGTGAAATTCGTAGAGGTCTA
TGCCTTCTATGAACCTGAATTTTTGAAAATTTCAAAAGAAGTTTATAACAAATGGTTGGGGGAGCTTCAAAAATTAAAAA
ACTATGACCATATGTTTGAGCGCCTTTTTGCAAAAAAAGCGCATATTCTTAGTCAAAAAGAGGAAAAGTTATTGGCTGCG
GCTGGTGAAATTTTTGAAAGCCCTTCAGAAACTTTTGAAATTTTTGATAATGCAGATATTAAGTTACCTATGGTCAAAAA
TGAATCTGATGAGATGGTCCAACTCACACATGGAAATTACTCTTCCTTAATGGAAAGTAAGAATAGGGAAGTACGAAAAG
CAGCCTACAAAGCACTTTATAGTAATTATGAACAATATCAGCATACTTATGCAAAGACCTTACAGACTAATGTAAAAGTC
CATAATCTTAATGCCCAAATCCGCTCTTATGATTCAGCCCGTCAAGCTGCTCTGGCTAATAATTTTGTTCCAGAAAAAGT
TTACGATGTTTTGATGGAGGCCATTCATCAACATTTGCCACTTTTACATCGTTATATTGAACTACGCAAGAAAATTTTAG
GAATTACTGATTTAAAGATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTTAACTATGAAGATGGAGTG
AAAAAAGCAGAAGAAGTTTTAGCGATATTTGGTAAAGAATATAAAGGAAAAGTTAAAGCAGCTTTTGAACAAAGATGGAT
TGATGTCGAAGAAAATATCGGAAAACGTTCGGGTGCTTATTCAGGTGGATCTTATGATACCAATGCTTTTATGCTTCTCA
ATTGGCAAGAAACGTTAAATGATCTTTTTACTTTAGTTCATGAAATGGGGCACTCAATGCATAGTACTTTCACGCGTGAA
AACCAACCATATGTTTATGGGGATTATCCAATCTTTTTAGCTGAAATTGCCTCAACTACAAATGAAAATATTTTAACTGA
AACTTTATTAAAGGAAAGTAAAGATGATAAGGAGCGCTTCGCCCTTTTGAACCACTGGCTTGATAGTTTCCGTGGAACTA
TTTTCCGTCAGAGTCAATTTGCCGAATTTGAACAAAAAATTCATGAAGCAGATGCTGCCGGTGAAGTTTTAACAAGTGAA
TACTTAAACTCACTTTATGGAGAAATAAATGAAAAATACTATAATTTAGCAGTCAAAGAAAATCCAGAAATTCAGTATGA
ATGGGCTAGAATTCCGCATTTTTATTATAATTTCTATGTTTTTCAATACGCAACAGGTTTTGCTGCGGCCACTTTCTTAG
CTGAAAAAGTTGTTCATGGTTCAACTGAGGATCGTCAAAAATATCTTGAATATTTGAAGGCAGGTTCTTCAGCTTATCCT
TTAGAAGTAATTGCTAAAGCTGGAGTTGATATGGAATCTACCGATTATTTAGATGCCGCCTTTGAGCTTTTTGAAAATCG
ATTGAATGAATTAGAAAAATTAGTTGAAAAAGGAGTCCATCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.226

100

0.642