Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LCG53_RS20940 Genome accession   NZ_CP084031
Coordinates   4481904..4483421 (+) Length   505 a.a.
NCBI ID   WP_102983714.1    Uniprot ID   -
Organism   Aeromonas caviae strain K433     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4476904..4488421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCG53_RS20925 (LCG53_20925) - 4478662..4479606 (-) 945 WP_113069234.1 branched-chain amino acid transaminase -
  LCG53_RS20930 (LCG53_20930) ilvM 4479619..4479876 (-) 258 WP_010676086.1 acetolactate synthase 2 small subunit -
  LCG53_RS20935 (LCG53_20935) ilvG 4479873..4481519 (-) 1647 WP_113069236.1 acetolactate synthase 2 catalytic subunit -
  LCG53_RS20940 (LCG53_20940) comM 4481904..4483421 (+) 1518 WP_102983714.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LCG53_RS20945 (LCG53_20945) - 4483554..4484453 (+) 900 WP_039039683.1 acyltransferase -
  LCG53_RS20950 (LCG53_20950) - 4484461..4485417 (+) 957 WP_045522722.1 acyltransferase -
  LCG53_RS20955 (LCG53_20955) - 4485363..4485848 (-) 486 WP_103255145.1 DUF523 domain-containing protein -
  LCG53_RS20960 (LCG53_20960) - 4485925..4486575 (-) 651 WP_029314880.1 NrtR DNA-binding winged helix domain-containing protein -
  LCG53_RS20965 (LCG53_20965) - 4486650..4487285 (+) 636 WP_069652407.1 nicotinamidase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54702.63 Da        Isoelectric Point: 7.4701

>NTDB_id=609081 LCG53_RS20940 WP_102983714.1 4481904..4483421(+) (comM) [Aeromonas caviae strain K433]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPAKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPSVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQSAETLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGTHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPRGSLTGKAERG
ESSQQIRERVLGARERMLSRSGKLNNLLDSREIEDVCRLSPQDAEFLEGAIQKLGLSIRAWHRILRVSRTIADLAGHVTI
ERAHLIEALGYRAMDRLLSRLRGGQ

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=609081 LCG53_RS20940 WP_102983714.1 4481904..4483421(+) (comM) [Aeromonas caviae strain K433]
ATGTCATTAGCTGTTGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTGGAGGTGCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTGGGGTTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTTC
TCAACGGCAATTTCGAATTTCCGGCCAAGCACATCACGGTCAACTTGGCCCCTGCGGATCTGCCCAAGGAGGGGGGCCGC
TTCGACCTGGCCATCGCTATCGGCATTCTCGCCGCATCCAAGCAGATACCCGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAATTGGCCCTGACGGGCGAGATCCGCCCCGTGCTTGGGGTGCTCCCCTCGGTGCTCGCCTGCCGCGACGCGGGGC
GCACCCTGCTGGTCCCACGGGAGAACGGTCCGGAGGCTTCCCTCATACAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCGGTCACCGCCTGGCTGGCGGGCCAGTACGAACTGCCGCTGCCGGAACCCCAGAGCGCGGAGACCCTGCCCGACGT
GCCGGATCTGCAGGACGTGATCGGTCAGTCCCAGGCGAAGCGGGCGCTGGAGATCGCCGCAGCTGGCAGCCACAACCTGT
TGTTCATCGGCCCCCCCGGCACCGGCAAGAGCATGTTGGCCAGCCGTCTGCCCGGCATTCTGCCACCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATTCACTCCATCGGCGGCCTCACCCCCCGCGCCGGCCACTGGCACCACAGGCCGTATCG
CACGCCCCATCACAGCGCCTCGGCAGTGGCGCTGGTGGGCGGGGGTACCCATCCCAGGCCTGGCGAAATTTCCCTCGCCC
ACAACGGGGTCCTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTTCGCGAGCCGCTGGAAACC
GGGCACATTACCATCAGTCGTGCCGCCCGCCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGTGCCATGAATCCCAG
CCCCTGCGGCCATTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTATCTGGGCAAGCTCTCCGGCC
CCTTTCTCGATCGGTTCGATCTGACGGTAGAGGTCCCGCTCTTGCCCAGGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAATCGAGCCAGCAGATACGCGAACGGGTGCTGGGGGCGCGAGAGCGCATGCTGAGTCGCAGCGGAAAACTCAACAACCT
GCTGGATAGTCGTGAAATCGAAGATGTTTGCAGATTATCACCACAGGATGCCGAGTTTCTGGAAGGTGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATCGCCGATCTGGCGGGACACGTCACCATC
GAGAGAGCGCATCTGATCGAAGCCCTGGGCTATCGTGCCATGGACAGGCTGTTGTCGCGGCTGCGCGGGGGCCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.745

99.406

0.634
  comM Haemophilus influenzae Rd KW20

61.858

100

0.62
  comM Vibrio campbellii strain DS40M4

62.151

99.406

0.618
  comM Glaesserella parasuis strain SC1401

60.63

100

0.61
  comM Legionella pneumophila str. Paris

50.992

99.802

0.509
  comM Legionella pneumophila strain ERS1305867

50.992

99.802

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.972

100

0.463