Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LCF43_RS03840 Genome accession   NZ_CP084023
Coordinates   864403..864933 (-) Length   176 a.a.
NCBI ID   WP_225181970.1    Uniprot ID   -
Organism   Pectobacterium aroidearum strain LJ2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 859403..869933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCF43_RS03815 - 860831..861268 (+) 438 WP_225181967.1 GNAT family N-acetyltransferase -
  LCF43_RS03820 - 861405..861836 (+) 432 WP_181845941.1 carboxymuconolactone decarboxylase family protein -
  LCF43_RS03825 - 861923..862537 (+) 615 WP_225181968.1 hypothetical protein -
  LCF43_RS03830 - 862598..863188 (-) 591 WP_225181969.1 hypothetical protein -
  LCF43_RS03835 - 863374..863832 (-) 459 Protein_750 GNAT family N-acetyltransferase -
  LCF43_RS03840 ssb 864403..864933 (-) 531 WP_225181970.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LCF43_RS03845 uvrA 865186..868020 (+) 2835 WP_180778596.1 excinuclease ABC subunit UvrA -
  LCF43_RS03850 - 868037..868456 (+) 420 WP_181847156.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LCF43_RS03855 - 868898..869755 (+) 858 WP_225181971.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18827.85 Da        Isoelectric Point: 5.9207

>NTDB_id=609018 LCF43_RS03840 WP_225181970.1 864403..864933(-) (ssb) [Pectobacterium aroidearum strain LJ2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQARQRPAQNSAP
AQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=609018 LCF43_RS03840 WP_225181970.1 864403..864933(-) (ssb) [Pectobacterium aroidearum strain LJ2]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACACTGGCAACTTCCGAATCCTGGCGTGATAAACAGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGTGTGGTGCTGTTCGGCAAACTGGCTGAAGTCGCGGGCGAATATCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGTTAGGCGGACGTCAGGGCGGCGGCGCACCAGCAGGTGGCGGCCAGCAGCAAGGCGGTTGGGGAC
AACCTCAGCAACCACAGGGCGGCAACCAGTTCAGCGGCGGCGCACAAGCTCGGCAGCGCCCAGCCCAAAACAGCGCTCCA
GCGCAAAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.727

100

0.773
  ssb Glaesserella parasuis strain SC1401

58.378

100

0.614
  ssb Neisseria meningitidis MC58

46.328

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.328

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.723

100

0.369