Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CYCME_RS02000 Genome accession   NC_021917
Coordinates   410293..411807 (-) Length   504 a.a.
NCBI ID   WP_015006820.1    Uniprot ID   S5TD84
Organism   Cycloclasticus zancles 78-ME     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 405293..416807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYCME_RS01990 (CYCME_0404) - 407746..408225 (+) 480 WP_020931978.1 c-type cytochrome -
  CYCME_RS01995 (CYCME_0405) - 408227..410230 (-) 2004 WP_020931979.1 UvrD-helicase domain-containing protein -
  CYCME_RS02000 (CYCME_0406) comM 410293..411807 (-) 1515 WP_015006820.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CYCME_RS02005 (CYCME_0407) - 411850..412098 (-) 249 WP_020162663.1 accessory factor UbiK family protein -
  CYCME_RS02010 (CYCME_0408) - 412309..413001 (+) 693 WP_020931980.1 TorF family putative porin -
  CYCME_RS02015 (CYCME_0409) glnK 413300..413638 (+) 339 WP_015006817.1 P-II family nitrogen regulator -
  CYCME_RS02020 (CYCME_0410) - 413663..414940 (+) 1278 WP_015006816.1 ammonium transporter -
  CYCME_RS02025 (CYCME_0411) - 415005..415895 (-) 891 WP_015006815.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  CYCME_RS02030 (CYCME_0412) djlA 415974..416750 (+) 777 WP_020931981.1 co-chaperone DjlA -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 55331.33 Da        Isoelectric Point: 7.9729

>NTDB_id=60887 CYCME_RS02000 WP_015006820.1 410293..411807(-) (comM) [Cycloclasticus zancles 78-ME]
MSLATTLTRSSTGINAPLVTVEAHLANGLPSLNIVGLPEAAVKESKDRVRSAILNCQFEFPAKRITINLAPADLPKEGGR
FDLPIALSILAASGQIPNDKLLDYEFLGELSLSGELRAIKGALPTAIACQTSHRTLCLPTHNQHEAALISSVDIIGAPHL
LAVCSHLHGQQELPLFKPKNDVTSPSINTLDFSDVHGQQHTKRALEIAAAGRHSLLMLGPPGTGKSMLAARLPSILPLLS
EEEAIETASIYSISQHNLDTHQWRMPPFRSPHHSASSVALVGGGSSPKPGEVSLAHHGVLFLDELPEFDRKVLEVLREPI
ENGKISISRANHQTEFPARFQLIAAMNPCPCGYLGDTSQRCQCNPVQISRYRNKISGPLLDRIDMHIEVPRISSEMLRKG
TNGGEQSSAQIALRVHHSQIKALKRQGQLNELLSTAQIKQHCQISDEDHQLLEQAIEKLGLSHRAYHRILRVSRTIADMD
HQTNIQRHHLTEALSYRRMDKRVT

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=60887 CYCME_RS02000 WP_015006820.1 410293..411807(-) (comM) [Cycloclasticus zancles 78-ME]
ATGTCACTAGCTACTACTCTAACGCGCAGCTCCACTGGCATTAATGCGCCATTAGTAACCGTTGAAGCGCACCTAGCAAA
CGGTTTACCCAGCCTAAATATTGTTGGCTTACCTGAGGCGGCTGTTAAAGAAAGTAAAGATCGCGTACGCAGCGCTATTC
TCAATTGTCAATTTGAGTTTCCTGCTAAGCGCATCACCATTAACTTAGCACCTGCTGATTTACCCAAAGAAGGCGGGCGA
TTCGATTTACCCATAGCGCTTAGTATTCTTGCAGCCTCTGGCCAGATACCCAACGACAAGCTGCTTGATTATGAGTTTCT
TGGCGAATTATCGCTAAGCGGTGAATTAAGAGCCATTAAAGGCGCATTACCCACAGCTATAGCCTGCCAAACAAGCCATC
GAACACTCTGCTTACCCACCCATAATCAACACGAAGCAGCGCTCATCTCAAGTGTTGATATTATTGGCGCCCCCCATCTG
CTAGCTGTTTGCTCGCACCTTCATGGACAGCAAGAACTGCCTCTTTTTAAACCTAAAAATGATGTAACCTCTCCCTCAAT
AAATACTCTCGACTTTTCAGACGTTCACGGTCAGCAACATACCAAACGCGCACTAGAAATTGCCGCTGCTGGACGCCACA
GCCTATTAATGCTTGGTCCCCCAGGAACCGGCAAATCAATGCTTGCTGCTCGATTACCAAGCATCTTGCCGCTACTAAGC
GAAGAAGAGGCCATTGAGACCGCCTCAATTTACTCTATTAGTCAGCACAACCTGGATACTCACCAGTGGCGGATGCCTCC
TTTTAGATCTCCTCACCATAGCGCTTCATCTGTTGCTTTGGTCGGTGGTGGCAGTTCGCCAAAACCCGGCGAAGTATCGC
TCGCGCATCACGGCGTTTTATTTTTAGACGAACTCCCCGAATTTGACCGTAAAGTCTTAGAGGTATTACGCGAACCTATT
GAAAATGGAAAAATATCCATCTCCCGCGCTAACCACCAAACAGAATTTCCTGCTCGCTTCCAACTTATCGCCGCGATGAA
CCCATGCCCTTGCGGTTACCTTGGTGATACTTCTCAACGATGCCAATGTAACCCTGTTCAAATCAGCCGTTATCGAAACA
AAATATCCGGCCCCTTGCTCGACAGAATTGATATGCATATTGAGGTACCCCGTATTTCCAGTGAAATGCTACGTAAAGGC
ACTAACGGAGGTGAGCAAAGTAGTGCACAAATTGCTTTACGGGTGCATCACTCGCAAATAAAAGCACTAAAACGACAAGG
TCAACTCAACGAATTATTATCCACTGCACAGATCAAACAACATTGCCAAATAAGCGATGAAGATCATCAGCTACTAGAGC
AAGCAATTGAAAAACTGGGTTTATCGCACCGTGCCTATCATCGCATTTTACGTGTCTCGCGAACCATCGCCGATATGGAC
CATCAAACTAATATTCAACGCCACCACTTAACTGAAGCCTTAAGCTATCGCCGCATGGATAAACGCGTCACATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S5TD84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.04

100

0.562
  comM Vibrio campbellii strain DS40M4

54.781

99.603

0.546
  comM Haemophilus influenzae Rd KW20

54.582

99.603

0.544
  comM Glaesserella parasuis strain SC1401

54.274

99.802

0.542
  comM Legionella pneumophila str. Paris

52.811

98.81

0.522
  comM Legionella pneumophila strain ERS1305867

52.811

98.81

0.522
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45

99.206

0.446

Multiple sequence alignment