Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LCH17_RS12110 Genome accession   NZ_CP083944
Coordinates   2632131..2633645 (-) Length   504 a.a.
NCBI ID   WP_224479767.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain CSUSB2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2627131..2638645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH17_RS12085 (LCH17_12085) - 2628320..2628955 (-) 636 WP_011707867.1 nicotinamidase -
  LCH17_RS12090 (LCH17_12090) - 2629031..2629681 (+) 651 WP_011707866.1 NrtR DNA-binding winged helix domain-containing protein -
  LCH17_RS12095 (LCH17_12095) - 2629715..2630200 (+) 486 WP_130631438.1 DUF523 domain-containing protein -
  LCH17_RS12100 (LCH17_12100) - 2630146..2631102 (-) 957 WP_024945523.1 acyltransferase -
  LCH17_RS12105 (LCH17_12105) - 2631096..2632010 (-) 915 WP_224479766.1 acyltransferase -
  LCH17_RS12110 (LCH17_12110) comM 2632131..2633645 (-) 1515 WP_224479767.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LCH17_RS12115 (LCH17_12115) ilvG 2634029..2635675 (+) 1647 WP_224479768.1 acetolactate synthase 2 catalytic subunit -
  LCH17_RS12120 (LCH17_12120) ilvM 2635672..2635923 (+) 252 WP_005306810.1 acetolactate synthase 2 small subunit -
  LCH17_RS12125 (LCH17_12125) - 2635936..2636880 (+) 945 WP_139705067.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54807.77 Da        Isoelectric Point: 7.6885

>NTDB_id=608734 LCH17_RS12110 WP_224479767.1 2632131..2633645(-) (comM) [Aeromonas hydrophila strain CSUSB2]
MSLAVVYSRASLGVAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQTTDALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASTVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRERVLGARERMLNRNGKLNNLLDSREIEEICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRRVI
EKEHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=608734 LCH17_RS12110 WP_224479767.1 2632131..2633645(-) (comM) [Aeromonas hydrophila strain CSUSB2]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCTTGGGTGTCGCGGCCCCGCAAGTGACGGTGGAGGTGCACCTCTCCAA
CGGTTTGCCCGCCTTCAACATGGTGGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTCC
TCAACGGCAATTTCGAGTTCCCCTCCAAACACATCACGGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGC
TTCGATCTGGCCATCGCCATCGGAATTCTCGCCGCTTCCAAGCAGATACCCGCAAAATACCTGCTCGATCACGAATTTTT
AGGCGAACTGGCCCTGACCGGCGAGATCCGCCCCGTGCTCGGGGTGCTGCCCGCTGTGCTCGCCTGCCGCGATGCGGGTC
GCACCCTGCTGGTACCGCGAGAAAACGGCCCCGAGGCTTCCCTCATTCAGGATGCCGAAGTACGTACCGCCCATCAGCTG
CTGGCCGTCACCGCCTGGCTGGCGGGCCAGTACGAGCTGCCGCTGCCGGATCCCCAGACCACGGATGCCCTGCCCGATGT
GCCGGACCTGCAGGATGTGATCGGCCAGTCCCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCACCCGGCACCGGCAAGAGCATGCTGGCCAGCCGCTTGCCCGGCATCTTGCCACCGCTGAGCGAACAG
GAGGCACAGCAGACCGCCGCCATTCACTCCATCGGCGGCCTCACCCCGCGCGCCGGTCACTGGCATCACAGACCCTACCG
TACGCCGCATCACAGCGCCTCGACGGTGGCGCTGGTGGGCGGCGGCAGCCACCCGCGGCCCGGTGAAATATCCCTGGCCC
ACAACGGGGTACTGTTTCTGGATGAACTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACC
GGCCACATCACCATCAGCCGGGCCGCGCGCCAGGTCGATTTTCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAATCCCAG
CCCTTGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGCAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCGAGCCAGCAGATCCGCGAACGGGTGCTGGGGGCACGGGAGCGCATGCTGAACCGCAACGGCAAGCTCAACAACCT
GCTTGATAGCCGTGAAATCGAAGAAATTTGCCGCTTATCGCCGCAGGATGCCGAGTTTCTGGAGAACGCTATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTGTCGCGCACCATAGCCGATCTGGCAGGACGACGGGTCATC
GAGAAGGAGCACCTGATCGAGGCGCTCGGCTACCGGGCCATGGACCGACTGCTGTCGCGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Vibrio campbellii strain DS40M4

62.351

99.603

0.621
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Glaesserella parasuis strain SC1401

60.552

100

0.609
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466