Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LCH15_RS01060 Genome accession   NZ_CP083938
Coordinates   243970..245508 (+) Length   512 a.a.
NCBI ID   WP_224649502.1    Uniprot ID   -
Organism   Comamonas thiooxydans strain CSUSB4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 238970..250508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH15_RS01040 (LCH15_01040) - 239695..241023 (-) 1329 WP_224649497.1 sulfatase -
  LCH15_RS01045 (LCH15_01045) - 241137..242129 (-) 993 WP_224649498.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  LCH15_RS01050 (LCH15_01050) - 242270..243241 (-) 972 WP_224649499.1 tripartite tricarboxylate transporter substrate binding protein -
  LCH15_RS01055 (LCH15_01055) - 243334..243885 (+) 552 WP_224649500.1 MarR family winged helix-turn-helix transcriptional regulator -
  LCH15_RS01060 (LCH15_01060) comM 243970..245508 (+) 1539 WP_224649502.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LCH15_RS01065 (LCH15_01065) - 245522..246451 (-) 930 WP_224649504.1 LysR substrate-binding domain-containing protein -
  LCH15_RS01070 (LCH15_01070) - 246563..247741 (+) 1179 WP_034351451.1 YbfB/YjiJ family MFS transporter -
  LCH15_RS01075 (LCH15_01075) - 247775..248842 (+) 1068 WP_224649505.1 nitronate monooxygenase family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54762.66 Da        Isoelectric Point: 7.1622

>NTDB_id=608619 LCH15_RS01060 WP_224649502.1 243970..245508(+) (comM) [Comamonas thiooxydans strain CSUSB4]
MGLALVQSRALLGLQAPAVTVEVHLANGLPSFTLVGLADVEVKEARERVRAAIVNAGLEFPNNQRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAQRLADYEFAGELSLTGALRPVRGALATALALQRQQQRVRLVLPPDSALEAAFVPAIEVFGA
AHLLDVVRQFIAHDATLAEQGDGVEGWQRVHSRPAEASLPSLDLREVRGQMQAKRALEIAAAGAHGVLMIGPPGSGKSML
AQRFAGLLPGMTDEEALEAAAIASLSGRFTPQLWRQRPFAAPHHTASSIALVGGGSPPRPGEISYAHCGALFLDELPEFA
RSALEALREPLETGRITIVRAVQRAEFPARFQLVAAMNPCPCGYWGSRIRACRCSPDQVARYQARISGPLLDRIDLHVEV
AALSPEELLAAPEGESSAAVQQRVSAARDKALQRQGLPNHQLQGAQLDTHLQLEPEALTFAHKAAARLGWSARGTHRALK
VARTIADLADSDSITQTHLAEALQYRRALMQP

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=608619 LCH15_RS01060 WP_224649502.1 243970..245508(+) (comM) [Comamonas thiooxydans strain CSUSB4]
ATGGGTCTGGCACTGGTTCAAAGTCGTGCACTGCTGGGCTTGCAGGCACCGGCTGTCACGGTGGAGGTCCATCTGGCCAA
CGGACTGCCTTCGTTCACCCTGGTGGGTCTGGCGGATGTGGAGGTCAAGGAGGCCCGCGAGCGCGTGCGCGCAGCCATCG
TCAATGCGGGGCTGGAGTTCCCGAACAATCAGCGCATCACGGTCAATCTGGCTCCGGCGGATCTGCCCAAGGATTCAGGC
CGCTTTGACCTGCCGATAGCGCTGGGCATTCTGGCGGCCAGCGGGCAGATCGATGCACAGCGGCTCGCCGATTATGAGTT
TGCAGGAGAGCTGTCCCTGACCGGTGCCCTGCGTCCGGTGCGCGGCGCCCTGGCTACTGCACTGGCCCTGCAGCGGCAGC
AACAGCGTGTGCGGCTGGTGCTGCCGCCGGACAGTGCGCTGGAGGCCGCCTTTGTGCCGGCCATCGAAGTCTTCGGCGCC
GCGCATCTGCTGGATGTGGTCAGGCAGTTCATCGCGCATGACGCCACCCTGGCGGAGCAGGGCGATGGCGTGGAGGGCTG
GCAGCGGGTGCACTCCAGGCCTGCCGAAGCCTCTTTGCCGTCGCTGGATCTGCGCGAGGTGCGCGGCCAGATGCAGGCCA
AGCGCGCGCTTGAAATTGCAGCTGCTGGCGCACATGGTGTGCTGATGATCGGCCCTCCGGGCTCGGGGAAATCCATGCTG
GCCCAGCGCTTTGCGGGTTTGCTGCCCGGCATGACCGATGAAGAGGCGCTCGAAGCCGCCGCCATTGCCAGCCTCAGCGG
TCGTTTTACGCCGCAGCTGTGGCGCCAGCGGCCATTTGCTGCTCCTCATCACACGGCCAGCTCCATCGCGCTGGTCGGCG
GCGGCTCTCCGCCCCGGCCCGGCGAGATTTCATATGCCCATTGCGGGGCGCTTTTCCTGGATGAGCTGCCCGAGTTCGCG
CGCAGCGCCCTGGAGGCTCTGCGAGAGCCGCTGGAGACCGGGCGCATCACCATCGTGCGGGCTGTGCAGAGGGCGGAGTT
TCCTGCCCGTTTTCAGCTGGTGGCAGCCATGAACCCCTGCCCCTGCGGTTACTGGGGCTCGCGCATCAGGGCCTGCCGCT
GCTCGCCCGATCAGGTGGCACGTTATCAGGCGCGCATCAGCGGTCCCTTGCTGGACCGTATCGATCTGCATGTGGAGGTG
GCGGCGCTGTCGCCCGAGGAGTTGCTTGCAGCGCCCGAAGGGGAGAGCAGCGCTGCCGTGCAGCAACGCGTGAGCGCGGC
CAGGGACAAGGCCTTGCAGCGTCAGGGCCTGCCCAATCATCAGTTGCAGGGGGCACAGCTCGACACGCATCTGCAGCTGG
AGCCCGAGGCGCTGACCTTTGCCCACAAGGCTGCAGCGCGCCTTGGCTGGTCGGCGCGCGGCACGCACCGGGCGTTGAAG
GTGGCGCGAACCATTGCCGATCTGGCGGACTCGGATTCCATCACGCAAACCCATTTGGCCGAGGCATTGCAGTACCGCCG
CGCGCTGATGCAGCCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.642

99.805

0.525
  comM Vibrio campbellii strain DS40M4

51.373

99.609

0.512
  comM Haemophilus influenzae Rd KW20

50.984

99.219

0.506
  comM Glaesserella parasuis strain SC1401

49.315

99.805

0.492
  comM Legionella pneumophila str. Paris

47.5

100

0.482
  comM Legionella pneumophila strain ERS1305867

47.5

100

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.529

99.609

0.434