Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LCD40_RS16365 Genome accession   NZ_CP083849
Coordinates   3364154..3365674 (-) Length   506 a.a.
NCBI ID   WP_045345305.1    Uniprot ID   -
Organism   Enterobacter hormaechei subsp. steigerwaltii strain 14269-yvys     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3359154..3370674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCD40_RS16355 (LCD40_16375) hdfR 3362848..3363669 (-) 822 WP_023304628.1 HTH-type transcriptional regulator HdfR -
  LCD40_RS16360 (LCD40_16380) - 3363788..3364126 (+) 339 WP_006808641.1 DUF413 domain-containing protein -
  LCD40_RS16365 (LCD40_16385) comM 3364154..3365674 (-) 1521 WP_045345305.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LCD40_RS16370 (LCD40_16390) ilvL 3366015..3366113 (+) 99 WP_001311244.1 ilv operon leader peptide -
  LCD40_RS16375 (LCD40_16395) ilvX 3366200..3366250 (+) 51 WP_166792073.1 peptide IlvX -
  LCD40_RS16380 (LCD40_16400) ilvG 3366253..3367899 (+) 1647 WP_023304625.1 acetolactate synthase 2 catalytic subunit -
  LCD40_RS16385 (LCD40_16405) ilvM 3367896..3368159 (+) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  LCD40_RS16390 (LCD40_16410) ilvE 3368178..3369107 (+) 930 WP_015572775.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54720.70 Da        Isoelectric Point: 7.5277

>NTDB_id=608235 LCD40_RS16365 WP_045345305.1 3364154..3365674(-) (comM) [Enterobacter hormaechei subsp. steigerwaltii strain 14269-yvys]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTPGLSSCEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELAEPQENDEVAPASPEDLSDIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIFSLVSSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHLSRTRAKICYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLSKLSGPFLDRFDLSLEIPLPPPGLLRQTGIRG
ESSATVRERVIAAQARQYARQNRLNARLDNSGIRQFCSLNAEDAGWLEETLTRFGLSIRAWQRLLKVARTVADVEGCPGI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=608235 LCD40_RS16365 WP_045345305.1 3364154..3365674(-) (comM) [Enterobacter hormaechei subsp. steigerwaltii strain 14269-yvys]
ATGTCACTGTCAGTTGTTTATACACGCGCGGCCATCGGCGTGAAGGCACCGCTTATTTCTGTAGAGGTTCATTTAAGTAA
TGGACTGCCCGGACTGACGCTGGTCGGCTTACCAGAAACGACCGTTAAAGAGGCGAGGGATCGCGTGCGCAGCGCAATTA
TTAATAGCGGTTATGCTTTTCCGGCGAAGAAGATCACCATTAACCTTGCGCCCGCCGATTTGCCAAAGGAGGGAGGGCGA
TATGATTTACCTATTGCTATAGCGCTTCTCGCGGCTTCTGAACAGCTCAATACGCCAGGGCTAAGCTCGTGTGAGTTCGT
GGGTGAATTAGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGAGCAATCTCGGGTGCGCTTGAAGCCATACGCGCGGGAA
GACAAATCATTGTGGCCAATGAAAATGCCTCTGAAGTAAGCCTTATCGCCGAAAAGGGGTGTCTTGTCGCAGGACATTTG
CAAGAGGTTTGCGCCTGGCTGGAAGGCCGACACGAGCTTGCCGAGCCGCAGGAGAATGACGAGGTGGCGCCAGCTTCGCC
CGAAGATCTCAGCGATATTATGGGTCAGGAACAGGGTAAGCGGGCGTTAGAGATAACGGCCGCGGGTGGGCATAACCTGT
TACTGATAGGTCCGCCAGGCACGGGGAAAACGATGCTGGCGAGCAGATTGAGCGGCCTGTTGCCACCCCTCAATAATCAT
GAAGCACTGGAAAGCGCCGCGATATTTAGCCTGGTCAGTTCTACGTCGCTGCATAAACAGTGGCGCCGCCGTCCTTTCCG
CTCTCCACACCACAGTGCGTCTCTTACCGCGATGGTGGGCGGGGGTTCGATCCCCGGACCGGGTGAAATCTCACTGGCGC
ACAACGGCATTTTGTTTCTGGATGAATTGCCAGAGTTTGAACGCCGCGTGCTGGATGCATTGCGGGAGCCGATTGAATCC
GGCGAAATCCATTTGTCTCGTACTCGGGCCAAAATATGCTACCCTGCGCAGTTTCAGCTAGTCGCGGCGATGAACCCTAG
CCCTACGGGTCATTATCAGGGCAATCATAACCGCTGTACGCCGGAGCAGACGCTGCGCTATCTGAGTAAGCTGTCTGGCC
CCTTCCTCGACCGTTTTGATTTATCTCTCGAGATCCCCCTGCCCCCGCCCGGTCTGCTGAGGCAAACCGGTATTAGGGGC
GAAAGCTCAGCAACTGTGCGTGAACGGGTTATTGCGGCGCAGGCGCGGCAGTATGCTCGTCAGAACAGGCTGAATGCCCG
GCTGGATAACAGCGGGATCCGACAGTTTTGTTCTCTCAACGCTGAAGATGCAGGCTGGCTGGAAGAGACACTGACGCGGT
TTGGGCTATCCATTCGCGCGTGGCAGCGTTTGTTGAAAGTAGCGCGCACGGTCGCCGACGTGGAGGGCTGCCCCGGAATA
GAGAGGCGGCATTTGCAGGAGGCATTAAGTTATCGTGCGATCGATCGGCTGCTGTTGCATCTGCAAAAAATGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.513

100

0.591
  comM Glaesserella parasuis strain SC1401

58.777

100

0.589
  comM Vibrio campbellii strain DS40M4

58.765

99.209

0.583
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Legionella pneumophila str. Paris

49.698

98.221

0.488
  comM Legionella pneumophila strain ERS1305867

49.698

98.221

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.333

100

0.437