Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LCD43_RS22275 Genome accession   NZ_CP083842
Coordinates   4598039..4599559 (+) Length   506 a.a.
NCBI ID   WP_023309657.1    Uniprot ID   -
Organism   Enterobacter asburiae strain 16773-yvys     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4593039..4604559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCD43_RS22250 (LCD43_22275) ilvE 4594605..4595534 (-) 930 WP_023309654.1 branched-chain-amino-acid transaminase -
  LCD43_RS22255 (LCD43_22280) ilvM 4595553..4595816 (-) 264 WP_024907956.1 acetolactate synthase 2 small subunit -
  LCD43_RS22260 (LCD43_22285) ilvG 4595813..4597459 (-) 1647 WP_045403897.1 acetolactate synthase 2 catalytic subunit -
  LCD43_RS22265 (LCD43_22290) ilvX 4597462..4597512 (-) 51 WP_166792073.1 peptide IlvX -
  LCD43_RS22270 (LCD43_22295) ilvL 4597599..4597697 (-) 99 WP_001311244.1 ilv operon leader peptide -
  LCD43_RS22275 (LCD43_22300) comM 4598039..4599559 (+) 1521 WP_023309657.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LCD43_RS22280 (LCD43_22305) - 4599590..4599928 (-) 339 WP_023309658.1 DUF413 domain-containing protein -
  LCD43_RS22285 (LCD43_22310) hdfR 4600047..4600868 (+) 822 WP_045403902.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54923.85 Da        Isoelectric Point: 6.8204

>NTDB_id=608219 LCD43_RS22275 WP_023309657.1 4598039..4599559(+) (comM) [Enterobacter asburiae strain 16773-yvys]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAEVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=608219 LCD43_RS22275 WP_023309657.1 4598039..4599559(+) (comM) [Enterobacter asburiae strain 16773-yvys]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCCGTCGAGGTTCATTTGAGCAA
TGGGCTACCCGGACTCACTCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGAGCAGGAC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTCATCGCAGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGGCGTCATGAACTGTCCGAGCCGGAGGAGTGTGATGATGCTATAGCGGATGCACC
GGAGGATCTCAGCGAGATTATGGGGCAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCTGCAGGTGGACACAATCTTC
TGTTAATTGGCCCGCCGGGTACGGGTAAAACCATGCTGGCAAGCAGGTTGAGTGGGTTACTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGTGCCGCCATATATAGCCTTATCAGTTCGACGTCGTTGCAAAAACAGTGGCGCCGTCGTCCTTTTCG
TTCCCCGCATCATAGCGCTTCACTGACGGCAATGGTCGGTGGCGGGGCGATTCCGGGGCCTGGAGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTTGATGAGCTGCCTGAGTTTGAGCGCCGAGTGCTGGATGCCCTGAGGGAGCCCATTGAATCC
GGTGAGATACATATCTCACGCACGCGAGCCAAAATAAGCTATCCCGCGCAGTTTCAGCTGGTCGCGGCGATGAATCCCAG
CCCGACGGGTCACTACCAGGGAAACCATAACCGCTGTACACCAGAGCAAACATTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATTCCCCTTCCCCCGCCGGGTCTGCTCAGGCAAACGGGCATAACGGGT
GAAAGCTCAGCGGAGGTACGCGAACGGGTGATTGCAGCCCAGACGCGGCAGTACGCTCGTCAGAACAGGCTGAATGCACG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTTCTCTTAACGTTGAGGATGCGGGATGGCTGGAGGAGACGTTGACGCGGT
TCGGACTGTCCATACGTGCGTGGCAGCGTTTGCTGAAGGTGGCCAGAACTATTGCTGACGTGGAGGGGTGCACTGACATT
GAGAGGAAACATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Vibrio cholerae strain A1552

58.367

99.209

0.579
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439