Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LCD48_RS22995 Genome accession   NZ_CP083834
Coordinates   4698804..4700324 (+) Length   506 a.a.
NCBI ID   WP_045889362.1    Uniprot ID   A0AAW7ZMK4
Organism   Enterobacter asburiae strain AR0468-yvys     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4693804..4705324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCD48_RS22970 (LCD48_22975) ilvE 4695370..4696299 (-) 930 WP_039264266.1 branched-chain-amino-acid transaminase -
  LCD48_RS22975 (LCD48_22980) ilvM 4696318..4696581 (-) 264 WP_024907956.1 acetolactate synthase 2 small subunit -
  LCD48_RS22980 (LCD48_22985) ilvG 4696578..4698224 (-) 1647 WP_045889364.1 acetolactate synthase 2 catalytic subunit -
  LCD48_RS22985 (LCD48_22990) ilvX 4698227..4698277 (-) 51 WP_166792073.1 peptide IlvX -
  LCD48_RS22990 (LCD48_22995) ilvL 4698364..4698462 (-) 99 WP_001311244.1 ilv operon leader peptide -
  LCD48_RS22995 (LCD48_23000) comM 4698804..4700324 (+) 1521 WP_045889362.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LCD48_RS23000 (LCD48_23005) - 4700355..4700693 (-) 339 WP_023309658.1 DUF413 domain-containing protein -
  LCD48_RS23005 (LCD48_23010) hdfR 4700812..4701633 (+) 822 WP_023309659.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54964.90 Da        Isoelectric Point: 6.8204

>NTDB_id=608196 LCD48_RS22995 WP_045889362.1 4698804..4700324(+) (comM) [Enterobacter asburiae strain AR0468-yvys]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDVIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAEVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCNDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=608196 LCD48_RS22995 WP_045889362.1 4698804..4700324(+) (comM) [Enterobacter asburiae strain AR0468-yvys]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAAGCACCGCTTATTTCCGTCGAGGTTCATTTGAGCAA
TGGGCTACCCGGACTCACTCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACTATCAACCTTGCCCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCGGGAGCCCTTGAAGCCATACGAGCAGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTCATCGCCGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGGCGGCATGAACTGTCTGAGCCGGAGGAGTGTGATGATGTTATAGCGGATGCACC
AGAAGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCTGCAGGTGGACACAATCTTC
TGTTAATTGGGCCGCCAGGTACGGGTAAAACCATGCTGGCAAGCAGGTTGAGTGGGTTACTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGCGCCGCCATATATAGCCTTATCAGTTCGACGTCGTTGCAAAAACAGTGGCGCCGTCGTCCTTTTCG
TTCCCCGCATCATAGCGCTTCACTGACGGCAATGGTCGGCGGCGGGGCGATTCCGGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTTGATGAACTGCCTGAATTTGAGCGCCGTGTGCTGGATGCACTAAGAGAGCCCATTGAATCC
GGTGAGATACATATCTCACGCACGCGAGCCAAAATAAGCTATCCCGCACAGTTTCAGCTGGTCGCGGCGATGAATCCCAG
CCCGACGGGTCACTACCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGTTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATTCCCCTTCCCCCGCCGGGTCTGCTCAGGCAAACGGGCATAACGGGT
GAAAGCTCAGCGGAGGTACGCGAACGGGTGATTGCTGCTCAGACGCGGCAGTACGCTCGTCAGAACAGGCTGAATGCGCG
TCTGGATAATGCCGGGATCCGGCAGTTTTGTTCACTTAACGTTGAGGATGCGGGATGGCTGGAGGAGACGTTAACGCGGT
TCGGGCTGTCCATACGTGCGTGGCAGCGTTTGCTGAAGGTGGCCAGAACTATTGCTGACGTAGAGGGGTGCAATGACATT
GAGAGGAAACATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.153

100

0.585
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Vibrio campbellii strain DS40M4

58.449

99.407

0.581
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.59

100

0.437