Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LCD48_RS01610 Genome accession   NZ_CP083834
Coordinates   347249..347779 (+) Length   176 a.a.
NCBI ID   WP_029740211.1    Uniprot ID   A0A263VT06
Organism   Enterobacter asburiae strain AR0468-yvys     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 342249..352779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCD48_RS01590 (LCD48_01585) aphA 342572..343285 (+) 714 WP_032662578.1 acid phosphatase AphA -
  LCD48_RS01595 (LCD48_01590) - 343399..343815 (+) 417 WP_045888339.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LCD48_RS01600 (LCD48_01595) - 343818..344171 (+) 354 WP_023310053.1 MmcQ/YjbR family DNA-binding protein -
  LCD48_RS01605 (LCD48_01600) uvrA 344175..346997 (-) 2823 WP_045888338.1 excinuclease ABC subunit UvrA -
  LCD48_RS01610 (LCD48_01605) ssb 347249..347779 (+) 531 WP_029740211.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LCD48_RS01615 (LCD48_01610) - 347842..348123 (-) 282 WP_008503385.1 YjcB family protein -
  LCD48_RS01620 (LCD48_01615) - 348769..350334 (+) 1566 WP_045888337.1 EAL domain-containing protein -
  LCD48_RS01625 (LCD48_01620) soxS 350341..350667 (-) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  LCD48_RS01630 (LCD48_01625) soxR 350766..351224 (+) 459 WP_045888336.1 redox-sensitive transcriptional activator SoxR -
  LCD48_RS01635 (LCD48_01630) - 351518..352189 (+) 672 WP_039264123.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18792.81 Da        Isoelectric Point: 5.2456

>NTDB_id=608179 LCD48_RS01610 WP_029740211.1 347249..347779(+) (ssb) [Enterobacter asburiae strain AR0468-yvys]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=608179 LCD48_RS01610 WP_029740211.1 347249..347779(+) (ssb) [Enterobacter asburiae strain AR0468-yvys]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGTGTAGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGGCCGGCGCTGAGAAGTACACCACAGAAGTCGTGGTCAACGTGGG
CGGTACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGTGCACCGGCAGGTGGCGGTCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A263VT06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.556

100

0.773
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364