Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LCD47_RS21970 Genome accession   NZ_CP083821
Coordinates   4581696..4583216 (+) Length   506 a.a.
NCBI ID   WP_038420806.1    Uniprot ID   -
Organism   Enterobacter cloacae subsp. cloacae strain 12961-yvys     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4576696..4588216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCD47_RS21945 (LCD47_21975) ilvE 4578262..4579191 (-) 930 WP_013099287.1 branched-chain-amino-acid transaminase -
  LCD47_RS21950 (LCD47_21980) ilvM 4579210..4579473 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  LCD47_RS21955 (LCD47_21985) ilvG 4579470..4581116 (-) 1647 WP_139936934.1 acetolactate synthase 2 catalytic subunit -
  LCD47_RS21960 (LCD47_21990) ilvX 4581119..4581169 (-) 51 WP_102046757.1 peptide IlvX -
  LCD47_RS21965 (LCD47_21995) ilvL 4581256..4581354 (-) 99 WP_023620831.1 ilv operon leader peptide -
  LCD47_RS21970 (LCD47_22000) comM 4581696..4583216 (+) 1521 WP_038420806.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LCD47_RS21975 (LCD47_22005) - 4583249..4583587 (-) 339 WP_013099290.1 DUF413 domain-containing protein -
  LCD47_RS21980 (LCD47_22010) hdfR 4583706..4584527 (+) 822 WP_020685959.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54981.95 Da        Isoelectric Point: 7.1231

>NTDB_id=608129 LCD47_RS21970 WP_038420806.1 4581696..4583216(+) (comM) [Enterobacter cloacae subsp. cloacae strain 12961-yvys]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTARLGSYEFIGELALTGALRGVPGAISGALEAIHAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAHLEGRHTLSEPEETGDILPESPDDLSDIIGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPSGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLSQTTIRG
ESTAKVRERVIASQARQYARQHKLNARLDNAEIRQFCHLKAEDACWLEETLTRFGLSIRAWQRLLKVARTIADVEGEPEI
ERHHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=608129 LCD47_RS21970 WP_038420806.1 4581696..4583216(+) (comM) [Enterobacter cloacae subsp. cloacae strain 12961-yvys]
ATGTCACTGTCAGTTGTTTACACGCGCGCGGCTATCGGAGTAAAGGCACCGCTTATTTCTGTGGAGGTTCATCTGAGTAA
TGGGCTCCCTGGGCTAACGCTTGTCGGCTTGCCAGAAACCACGGTCAAAGAAGCCAGAGATCGGGTTCGCAGCGCAATTA
TCAATAGCGGTTATACCTTCCCCGCCAAGAAGATCACGATCAACCTTGCTCCCGCAGATCTGCCCAAGGAGGGCGGACGA
TACGATTTACCTATCGCTATTGCGCTTCTCGCAGCCTCTGAGCAGCTCAACACTGCGAGGCTAGGCTCGTACGAGTTCAT
TGGCGAACTGGCGCTTACAGGCGCGTTAAGAGGCGTTCCTGGCGCCATCTCTGGTGCGCTGGAAGCCATTCATGCCGGTC
GGCAAATTATTGTAGCCAATGAAAATGCCTCAGAAGTGAGCCTGATTGCCGAGAAAGGATGCCTGGTCGCGGGGCATTTA
CAGGAAGTCTGCGCGCACCTTGAAGGCCGACATACGCTCTCCGAGCCAGAGGAAACCGGAGATATCCTGCCTGAAAGCCC
GGACGACCTCAGCGATATTATCGGGCAGGAGCAGGGGAAGCGGGCACTGGAGATCACCGCAGCCGGAGGACATAACCTGT
TGCTGATTGGCCCGCCGGGAACAGGGAAAACCATGCTGGCGAGCAGGCTGAATGGGTTATTGCCACCACTCAATAATCAT
GAGGCACTTGAAAGCGCAGCGATATTTAGCCTGGTGAGCTCTGCATCATTGCAAAAACAGTGGCGACGACGCCCTTTTCG
CTCTCCCCATCACAGTGCCTCCCTGACGGCCATGGTCGGAGGGGGCTCCATTCCGGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATCCTGTTCCTTGACGAACTGCCTGAGTTTGAACGCCGCGTACTGGATGCCCTGCGGGAACCTATCGAATCT
GGCGAGATCCATATCTCCCGCACGCGCGCCAAAATAAGCTACCCGGCACAGTTCCAGCTGGTTGCGGCCATGAACCCCAG
CCCATCAGGCCATTATCAGGGGAATCATAATCGCTGCACGCCTGAGCAGACGCTGCGCTATCTGGGGAAGCTGTCAGGCC
CTTTCCTCGATCGTTTTGATTTATCCCTGGAGATCCCCTTACCTCCCCCAGGTTTGCTCAGCCAGACAACGATACGCGGT
GAGAGCACAGCGAAGGTTCGCGAACGGGTTATCGCCTCACAGGCCCGACAGTACGCTCGTCAACATAAGCTGAATGCGCG
TCTGGATAATGCTGAGATTCGGCAGTTTTGCCATCTTAAGGCTGAGGATGCCTGCTGGCTTGAAGAGACATTGACGCGAT
TTGGGCTCTCGATCCGTGCATGGCAGCGCCTGCTGAAAGTGGCTCGCACTATTGCCGATGTGGAAGGAGAGCCAGAAATT
GAAAGACACCATCTGCAGGAAGCGCTGAGCTATCGCGCCATAGATCGGTTGTTGCTGCACCTGCAAAAATTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.984

100

0.597
  comM Glaesserella parasuis strain SC1401

59.369

100

0.595
  comM Vibrio cholerae strain A1552

59.96

99.209

0.595
  comM Vibrio campbellii strain DS40M4

59.524

99.605

0.593
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443