Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LCD39_RS21690 Genome accession   NZ_CP083815
Coordinates   4421454..4422974 (+) Length   506 a.a.
NCBI ID   WP_246946800.1    Uniprot ID   -
Organism   Enterobacter asburiae strain 161373-yvys     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4416454..4427974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCD39_RS21670 (LCD39_21705) ilvE 4418020..4418949 (-) 930 WP_023309654.1 branched-chain-amino-acid transaminase -
  LCD39_RS21675 (LCD39_21710) ilvM 4418968..4419231 (-) 264 WP_246946797.1 acetolactate synthase 2 small subunit -
  LCD39_RS21680 (LCD39_21715) ilvG 4419228..4420874 (-) 1647 WP_246946798.1 acetolactate synthase 2 catalytic subunit -
  LCD39_RS21685 (LCD39_21720) ilvL 4421023..4421112 (-) 90 WP_246946799.1 ilv operon leader peptide -
  LCD39_RS21690 (LCD39_21725) comM 4421454..4422974 (+) 1521 WP_246946800.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LCD39_RS21695 (LCD39_21730) - 4423005..4423343 (-) 339 WP_023309658.1 DUF413 domain-containing protein -
  LCD39_RS21700 (LCD39_21735) hdfR 4423462..4424283 (+) 822 WP_214580483.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55010.98 Da        Isoelectric Point: 6.8204

>NTDB_id=608086 LCD39_RS21690 WP_246946800.1 4421454..4422974(+) (comM) [Enterobacter asburiae strain 161373-yvys]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDVIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSALLTAMVGGGAIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEVPLPPPGLLRQTGITG
ESSAEVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETFTRFGLSIRAWQRLLKVARTIADVEGCNDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=608086 LCD39_RS21690 WP_246946800.1 4421454..4422974(+) (comM) [Enterobacter asburiae strain 161373-yvys]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCCGTCGAGGTTCATTTGAGCAA
TGGGCTACCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATTTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGAGCAGGAC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTCATCGCCGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGGCGACATGAACTGTCCGAGCCGGAGGAGTGTGATGATGTTATAGCGGATGCACC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCTGCAGGTGGACACAATCTTC
TGTTAATTGGGCCGCCAGGTACGGGTAAAACCATGCTGGCAAGCAGGTTGAGTGGGTTACTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGCGCCGCCATATATAGCCTTATCAGTTCGACGTCGTTGCAAAAACAGTGGCGCCGTCGTCCTTTTCG
TTCCCCGCATCATAGCGCTTTACTGACGGCAATGGTCGGCGGCGGGGCGATTCCGGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTTGATGAACTGCCTGAATTTGAGCGCCGTGTACTGGATGCACTAAGAGAGCCCATTGAATCC
GGTGAGATACATATCTCACGCACGCGAGCCAAAATAAGCTATCCCGCACAGTTTCAGCTGGTCGCGGCGATGAATCCCAG
CCCGACGGGTCACTACCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGTTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAGTTCCCCTTCCCCCGCCGGGTCTGCTCAGGCAAACGGGCATAACGGGT
GAAAGCTCAGCGGAAGTACGCGAACGGGTGATTGCTGCTCAGACGCGGCAGTACGCTCGTCAGAACAGGCTGAATGCACG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTTCACTTAATGTTGAGGATGCGGGATGGCTGGAGGAGACGTTTACGCGGT
TCGGGCTGTCCATACGTGCGTGGCAGCGTTTGCTGAAGGTGGCCAGAACCATTGCTGACGTAGAGGGGTGCAATGACATT
GAGAGGAAACATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

57.957

100

0.583
  comM Glaesserella parasuis strain SC1401

57.791

100

0.579
  comM Vibrio campbellii strain DS40M4

57.853

99.407

0.575
  comM Vibrio cholerae strain A1552

57.968

99.209

0.575
  comM Legionella pneumophila str. Paris

49.698

98.221

0.488
  comM Legionella pneumophila strain ERS1305867

49.698

98.221

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.59

100

0.437