Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LCD39_RS01515 Genome accession   NZ_CP083815
Coordinates   327616..328146 (+) Length   176 a.a.
NCBI ID   WP_029740211.1    Uniprot ID   A0A263VT06
Organism   Enterobacter asburiae strain 161373-yvys     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 322616..333146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCD39_RS01495 (LCD39_01495) aphA 322940..323653 (+) 714 WP_032662578.1 acid phosphatase AphA -
  LCD39_RS01500 (LCD39_01500) - 323767..324183 (+) 417 WP_023310052.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LCD39_RS01505 (LCD39_01505) - 324186..324539 (+) 354 WP_214539046.1 MmcQ/YjbR family DNA-binding protein -
  LCD39_RS01510 (LCD39_01510) uvrA 324543..327365 (-) 2823 WP_029740212.1 excinuclease ABC subunit UvrA -
  LCD39_RS01515 (LCD39_01515) ssb 327616..328146 (+) 531 WP_029740211.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LCD39_RS01520 (LCD39_01520) - 328209..328490 (-) 282 WP_008503385.1 YjcB family protein -
  LCD39_RS01525 (LCD39_01525) - 329193..330116 (-) 924 WP_001118618.1 IS5-like element IS903B family transposase -
  LCD39_RS01530 (LCD39_01530) - 330202..331766 (+) 1565 Protein_298 EAL domain-containing protein -
  LCD39_RS01535 (LCD39_01535) soxS 331773..332099 (-) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  LCD39_RS01540 (LCD39_01540) soxR 332198..332656 (+) 459 WP_023331806.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18792.81 Da        Isoelectric Point: 5.2456

>NTDB_id=608069 LCD39_RS01515 WP_029740211.1 327616..328146(+) (ssb) [Enterobacter asburiae strain 161373-yvys]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=608069 LCD39_RS01515 WP_029740211.1 327616..328146(+) (ssb) [Enterobacter asburiae strain 161373-yvys]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGTGTAGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGGCCGGCGCTGAGAAGTACACCACAGAAGTCGTGGTCAACGTGGG
CGGTACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A263VT06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.556

100

0.773
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364