Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LB453_RS20495 Genome accession   NZ_CP083809
Coordinates   3722362..3722913 (-) Length   183 a.a.
NCBI ID   WP_103793662.1    Uniprot ID   -
Organism   Pantoea agglomerans strain 33.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3717362..3727913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB453_RS20475 (LB453_20415) - 3718449..3718844 (+) 396 WP_103793665.1 transposase -
  LB453_RS20480 (LB453_20420) - 3719769..3720728 (-) 960 WP_103793664.1 DMT family transporter -
  LB453_RS20485 (LB453_20425) - 3720803..3721636 (-) 834 WP_103793663.1 AraC family transcriptional regulator -
  LB453_RS20490 (LB453_20430) - 3721764..3722297 (+) 534 WP_103794023.1 isochorismatase family protein -
  LB453_RS20495 (LB453_20435) ssb 3722362..3722913 (-) 552 WP_103793662.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LB453_RS20500 (LB453_20440) uvrA 3723139..3725976 (+) 2838 WP_103793661.1 excinuclease ABC subunit UvrA -
  LB453_RS20505 (LB453_20445) - 3726321..3727385 (+) 1065 WP_033793196.1 NAD(P)-dependent alcohol dehydrogenase -
  LB453_RS20510 (LB453_20450) - 3727424..3727759 (-) 336 WP_103793660.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19589.53 Da        Isoelectric Point: 5.2358

>NTDB_id=608062 LB453_RS20495 WP_103793662.1 3722362..3722913(-) (ssb) [Pantoea agglomerans strain 33.1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVNVGGTMQMLGGRQQGGASAGGAPMGGQQSGGNNNGWGQPQQPQGGNQFSGGAQSRP
QPQSAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=608062 LB453_RS20495 WP_103793662.1 3722362..3722913(-) (ssb) [Pantoea agglomerans strain 33.1]
ATGGCCAGTCGTGGCGTAAATAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTGCGCTACATGCCGAATGG
TGGCGCGGTTGCCAACATTACGCTGGCCACGTCGGAAAGCTGGCGTGACAAGCAGACCGGTGAAAACAAAGAGATCACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAGCTGGCGGAAGTCGCTGGCGAATATCTGCGTAAAGGTTCGCAGGTCTATATC
GAAGGTCAGCTGCGCACCCGTAAATGGCAGGACCAGGGCGGCCAGGATCGCTATACCACGGAAGTAGTGGTCAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGCAGGGCGGTGCCAGCGCAGGCGGCGCGCCGATGGGCGGCCAGCAGAGCG
GCGGCAACAATAACGGCTGGGGCCAGCCGCAGCAGCCGCAGGGCGGAAACCAGTTCAGCGGCGGTGCGCAGTCGCGTCCG
CAGCCGCAGAGCGCGCCGGCGAGCAACAACAACGAACCGCCGATGGATTTTGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.432

100

0.732
  ssb Glaesserella parasuis strain SC1401

57.979

100

0.596
  ssb Neisseria meningitidis MC58

45.503

100

0.47
  ssb Neisseria gonorrhoeae MS11

45.503

100

0.47
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.464

98.907

0.361