Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K8O61_RS01795 Genome accession   NZ_CP083804
Coordinates   409219..410739 (-) Length   506 a.a.
NCBI ID   WP_237655470.1    Uniprot ID   -
Organism   Xanthomonas cerealis pv. cerealis strain ICMP 16317     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 404219..415739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O61_RS01780 (K8O61_01795) - 405590..406423 (+) 834 WP_237655469.1 alpha/beta fold hydrolase -
  K8O61_RS01785 (K8O61_01800) - 406826..407914 (+) 1089 WP_230812591.1 lipocalin family protein -
  K8O61_RS01790 (K8O61_01805) - 407973..409070 (+) 1098 WP_039006280.1 lipocalin-like domain-containing protein -
  K8O61_RS01795 (K8O61_01810) comM 409219..410739 (-) 1521 WP_237655470.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K8O61_RS01800 (K8O61_01815) ubiK 410753..411022 (-) 270 WP_237655471.1 ubiquinone biosynthesis accessory factor UbiK -
  K8O61_RS01805 (K8O61_01820) - 411199..411537 (+) 339 WP_003480503.1 P-II family nitrogen regulator -
  K8O61_RS01810 (K8O61_01825) - 411910..413935 (+) 2026 Protein_357 beta-N-acetylhexosaminidase family protein -
  K8O61_RS01815 (K8O61_01830) - 414059..414313 (-) 255 WP_237655473.1 hypothetical protein -
  K8O61_RS01820 (K8O61_01835) speE 414337..415188 (-) 852 WP_058196319.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53573.22 Da        Isoelectric Point: 8.9626

>NTDB_id=607985 K8O61_RS01795 WP_237655470.1 409219..410739(-) (comM) [Xanthomonas cerealis pv. cerealis strain ICMP 16317]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAAILCAQYEFPARRITVNLAPADLPKDGGR
FDLPIALGILAAAGQLDPQALGNYEFLGELALTGELRAVDGVLPAALAAAQAGRTLIVPAGNGPEAALAQHVQAFTARTL
LEVCALLNGSKTLPAAEALPAAATPFPDLSDVRGQAQARRALEIAAAGHHHLLLVGSPGCGKTLLASRLPGILPEASEAE
ALEAAAIASVSGRGLDPARWRQRPYRSPHHTASAVSLVGGGTHPRPGEISLAHRGVLFLDELPEWNRHALEVLREPLESG
TVTVSRAARSAQFPARFQLVAAMNPCPCGWAGDASGRCRCSDDSIRRYRARISGPLLDRIDLHVDVPRLPPQALRANAAP
GESSANVRARVEQARQRQLARAGCPNGQLGHSETLRDCRLQPRDEALLEHAIDRLRLSARSLHRILRVARTIADLASSDA
IATAHLTEAIGYRHLDRGEAPLARSA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=607985 K8O61_RS01795 WP_237655470.1 409219..410739(-) (comM) [Xanthomonas cerealis pv. cerealis strain ICMP 16317]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTAGGGTCGAAGTCCATTTGTCCGG
AGGACTGCCGGCGACGCAGATCGTCGGCCTGCCCGAGGCCGCGGTACGCGAATCGCGCGACCGGGTGCGCGCCGCCATCC
TGTGCGCGCAATACGAATTCCCGGCGCGGCGTATCACCGTCAACCTGGCCCCGGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCCGCCGCCGGGCAACTCGACCCGCAGGCGCTGGGCAACTACGAATTCCT
CGGCGAACTGGCCCTGACCGGCGAACTGCGTGCCGTGGACGGGGTGCTGCCGGCGGCGCTGGCCGCCGCGCAAGCCGGGC
GCACGCTGATCGTGCCCGCCGGCAACGGCCCCGAAGCGGCGCTGGCGCAACACGTGCAAGCGTTCACCGCGCGCACCCTG
CTCGAAGTCTGCGCGCTGTTGAACGGCAGCAAGACCTTGCCCGCCGCCGAAGCCCTGCCGGCCGCGGCCACACCGTTTCC
CGACCTGAGCGACGTGCGCGGGCAGGCCCAGGCGCGGCGTGCGCTGGAGATCGCGGCAGCCGGTCATCACCATCTGTTGC
TGGTCGGCAGCCCGGGCTGCGGCAAGACCCTGCTGGCTTCGCGCCTGCCCGGCATCCTGCCCGAAGCCAGCGAGGCCGAG
GCGCTGGAAGCGGCGGCGATCGCCTCGGTCAGCGGTCGCGGCCTGGACCCGGCGCGCTGGCGGCAACGCCCCTACCGATC
CCCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGCACCCATCCGCGCCCCGGCGAAATCTCGCTGGCGCATC
GCGGCGTGTTGTTCCTCGACGAGTTGCCCGAGTGGAACCGGCACGCGCTGGAAGTGCTGCGTGAGCCACTGGAATCGGGC
ACGGTCACCGTCTCGCGGGCCGCACGCAGCGCCCAGTTCCCGGCGCGCTTCCAGCTGGTCGCGGCGATGAACCCCTGCCC
CTGCGGCTGGGCCGGCGATGCCAGCGGCCGCTGCCGCTGCAGCGACGACAGCATCCGCCGCTACCGCGCACGCATCTCCG
GCCCCTTGCTGGACCGCATCGACCTGCATGTGGACGTGCCCCGGCTGCCGCCGCAGGCGTTGCGGGCCAATGCAGCTCCC
GGCGAAAGCAGCGCCAACGTGCGCGCCCGGGTGGAACAGGCGCGGCAACGCCAGCTGGCGCGCGCCGGCTGCCCCAACGG
CCAGCTCGGCCACAGCGAGACCCTGCGCGACTGCCGCCTGCAGCCGCGCGACGAAGCGCTGCTGGAACACGCCATCGACC
GCCTACGCCTGTCGGCACGCTCCCTGCACCGCATCCTGCGCGTGGCCCGCACCATCGCCGACCTGGCCAGCAGCGACGCG
ATCGCGACAGCGCACCTGACCGAAGCGATCGGTTACCGGCACCTGGACCGCGGTGAGGCGCCATTGGCGCGCAGCGCCTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.912

98.617

0.551
  comM Vibrio campbellii strain DS40M4

54.582

99.209

0.542
  comM Haemophilus influenzae Rd KW20

54.167

99.605

0.54
  comM Glaesserella parasuis strain SC1401

53.571

99.605

0.534
  comM Legionella pneumophila str. Paris

50.397

99.605

0.502
  comM Legionella pneumophila strain ERS1305867

50.397

99.605

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443