Detailed information NTG0060723

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: JMUB1273_RS08285
• Genome accession: NZ_AP018922
• Coordinates: 1657081..1657767 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692886.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain JMUB1273
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1652081..1662767

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JMUB1273_RS08240 (JMUB1273_1543)	rpmA	1652795..1653079 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
JMUB1273_RS08245 (JMUB1273_1544)	-	1653091..1653411 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
JMUB1273_RS08250 (JMUB1273_1545)	rplU	1653417..1653725 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
JMUB1273_RS08255 (JMUB1273_1546)	mreD	1654018..1654548 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
JMUB1273_RS08260 (JMUB1273_1547)	mreC	1654548..1655390 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
JMUB1273_RS08265	-	1655589..1655708 (-)	120	WP_000840602.1	hypothetical protein	-
JMUB1273_RS08270 (JMUB1273_1548)	-	1655782..1656255 (-)	474	WP_001236734.1	DUF4930 family protein	-
JMUB1273_RS08275 (JMUB1273_1549)	-	1656415..1656612 (+)	198	WP_072467374.1	hypothetical protein	-
JMUB1273_RS08280 (JMUB1273_1550)	-	1656729..1657013 (-)	285	WP_000171859.1	hypothetical protein	-
JMUB1273_RS08285 (JMUB1273_1551)	ysxA/radC	1657081..1657767 (-)	687	WP_000692886.1	RadC family protein	Machinery gene
JMUB1273_RS08290 (JMUB1273_1552)	-	1657764..1658471 (-)	708	WP_119267458.1	prepilin peptidase	-
JMUB1273_RS08300 (JMUB1273_1553)	-	1658747..1660018 (-)	1272	WP_001108346.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
JMUB1273_RS08305 (JMUB1273_1554)	-	1660031..1662661 (-)	2631	WP_000425353.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25311.24 Da
• Isoelectric Point: 6.7572

>NTDB_id=60723 JMUB1273_RS08285 WP_000692886.1 1657081..1657767(-) (ysxA/radC) [Staphylococcus aureus strain JMUB1273]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=60723 JMUB1273_RS08285 WP_000692886.1 1657081..1657767(-) (ysxA/radC) [Staphylococcus aureus strain JMUB1273]
TTGAAAATTAAAGAAATGGTAACTTCGGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTTGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377