Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LA331_RS09585 Genome accession   NZ_CP083658
Coordinates   1930639..1932126 (+) Length   495 a.a.
NCBI ID   WP_005233453.1    Uniprot ID   N9P8V7
Organism   Acinetobacter variabilis strain FDAARGOS_1487     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1925639..1937126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA331_RS09560 (LA331_09560) ribD 1926555..1927643 (-) 1089 WP_005233459.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  LA331_RS09565 (LA331_09565) nrdR 1927646..1928113 (-) 468 WP_004787309.1 transcriptional regulator NrdR -
  LA331_RS09570 (LA331_09570) - 1928253..1929668 (-) 1416 WP_005233457.1 ammonium transporter -
  LA331_RS09575 (LA331_09575) glnK 1929729..1930067 (-) 339 WP_004650081.1 P-II family nitrogen regulator -
  LA331_RS09580 (LA331_09580) - 1930346..1930573 (+) 228 WP_034169813.1 accessory factor UbiK family protein -
  LA331_RS09585 (LA331_09585) comM 1930639..1932126 (+) 1488 WP_005233453.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LA331_RS09590 (LA331_09590) - 1932174..1932908 (-) 735 WP_005233452.1 TorF family putative porin -
  LA331_RS09595 (LA331_09595) - 1933770..1935116 (+) 1347 WP_005233450.1 OprD family outer membrane porin -
  LA331_RS09600 (LA331_09600) ppa 1935217..1935753 (-) 537 WP_005233448.1 inorganic diphosphatase -
  LA331_RS09605 (LA331_09605) - 1935875..1936273 (-) 399 WP_004787362.1 MAPEG family protein -
  LA331_RS09610 (LA331_09610) - 1936374..1936754 (+) 381 WP_005233447.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54336.33 Da        Isoelectric Point: 7.5768

>NTDB_id=607192 LA331_RS09585 WP_005233453.1 1930639..1932126(+) (comM) [Acinetobacter variabilis strain FDAARGOS_1487]
MSFAKIYTRGLLGLHAPLIEVEVHVSSGMPSLTIVGLPEAAVRESKDRVRSAILNSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILLASGQLPENCTDNLEFIGELALDGQLRPVTGILSIAIACQQAHHQLILPSPNAQEASQLPDFQVFAANHL
QEVCAHLAQAETLTPFKTSPLDQHSFYKFDLVDVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLASILPPLNT
QENLEVASIYSIANANHPFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLVAAMNPCPCGYAFNQDSRCQCSPETIKRYQNRISGPLLDRIDLHIDVPPLQAQELQDNKPVE
NSETVRQRVISAYNIQIERQNVLNMSLSPKQLEQYAPLDPPAQKMIELAQQKLNLSARGYHRILRVARTIADLNQSPNIQ
TGHLSEALSYRGQHI

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=607192 LA331_RS09585 WP_005233453.1 1930639..1932126(+) (comM) [Acinetobacter variabilis strain FDAARGOS_1487]
ATGTCTTTTGCCAAAATTTATACGCGAGGCCTGTTAGGCCTGCATGCACCTTTAATTGAAGTCGAAGTCCATGTCAGTTC
TGGCATGCCTTCCCTCACCATTGTGGGGCTTCCTGAAGCCGCAGTCAGAGAAAGTAAGGATCGGGTTCGCTCTGCCATTC
TGAATAGTGGCTTTCAGTTTCCGACTAAACGCCTGACGATTAATCTGGCACCTGCCGATCTACCTAAAGATGGCTCACGT
TTAGACTTGCCGATTGCGCTAGGAATTTTACTGGCCTCAGGGCAGCTTCCAGAAAATTGTACTGATAATCTTGAGTTTAT
TGGGGAGCTGGCCCTAGATGGTCAATTGCGGCCTGTAACAGGAATCCTGAGCATTGCAATCGCCTGCCAGCAGGCACATC
ACCAGCTGATCTTGCCTAGTCCGAATGCTCAGGAAGCCTCTCAGCTCCCGGATTTTCAGGTATTTGCTGCCAATCATTTG
CAGGAAGTCTGTGCACATCTGGCTCAAGCAGAAACCTTGACCCCGTTTAAGACCAGTCCATTAGATCAGCACTCTTTTTA
TAAATTTGATCTGGTGGATGTGAAAGGACAATTGCGACCACGACGTGCCTTAGAAATTGCAGCTGCAGGTGGCCATTCCC
TGCTGTTCCGCGGTCCACCTGGTACAGGTAAAACCTTGTTAGCATCGCGCCTCGCCAGTATTTTACCGCCCTTAAATACT
CAGGAAAATCTGGAAGTTGCCAGTATCTATTCAATTGCCAATGCCAATCATCCCTTTGGCCAGCGGCCATTTCGGGCACC
GCATCATACTGCTTCTGCCATTGCGTTGGTCGGCGGTGGCTCACATCCTAAACCCGGAGAGATCACACTGGCGCATTTGG
GGGTGTTATTTCTGGACGAATTGCCTGAGTTTGACCGCAAGGTTTTAGAAGTGTTACGTCAGCCGCTTGAGTCCAAAGAA
ATTGTGATTTCGCGTGCTTCCCGGCAAATTACTTTTCCAGCCAATTTTCAGCTGGTGGCAGCCATGAATCCTTGTCCATG
CGGTTATGCATTTAATCAGGACAGCCGCTGTCAATGTTCACCTGAAACCATCAAGCGTTATCAGAACCGGATTTCTGGTC
CACTGCTAGACCGGATTGACCTGCATATTGATGTACCACCTTTACAAGCACAGGAGTTACAGGACAATAAACCTGTCGAA
AACTCTGAAACGGTCAGACAGCGTGTGATCAGCGCCTATAATATTCAGATCGAACGGCAAAATGTCTTAAACATGAGTCT
TAGTCCGAAACAACTGGAACAATATGCCCCTCTTGATCCACCAGCTCAGAAAATGATTGAACTGGCTCAACAGAAACTGA
ATTTATCAGCACGAGGCTATCATCGGATTTTGCGTGTTGCCAGAACCATTGCCGATCTTAACCAAAGTCCAAATATTCAG
ACTGGACATTTATCGGAAGCCCTGTCTTATCGCGGGCAGCACATTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9P8V7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.503

100

0.519
  comM Vibrio cholerae strain A1552

51.919

100

0.519
  comM Legionella pneumophila str. Paris

51.21

100

0.513
  comM Legionella pneumophila strain ERS1305867

51.21

100

0.513
  comM Glaesserella parasuis strain SC1401

50.501

100

0.509
  comM Vibrio campbellii strain DS40M4

50.505

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.012

100

0.477