Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NMD50_RS02290 Genome accession   NZ_CP100922
Coordinates   466487..467611 (+) Length   374 a.a.
NCBI ID   WP_370602840.1    Uniprot ID   -
Organism   Escherichia coli strain ET734     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 461487..472611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD50_RS02265 (NMD50_02260) mscL 461613..462023 (-) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -
  NMD50_RS02270 (NMD50_02265) trkA 462153..463529 (-) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  NMD50_RS02275 (NMD50_02270) rsmB 463551..464840 (-) 1290 WP_000744778.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  NMD50_RS02280 (NMD50_02275) fmt 464886..465833 (-) 948 WP_337235539.1 methionyl-tRNA formyltransferase -
  NMD50_RS02285 (NMD50_02280) def 465848..466357 (-) 510 WP_000114984.1 peptide deformylase -
  NMD50_RS02290 (NMD50_02285) dprA 466487..467611 (+) 1125 WP_370602840.1 DNA-protecting protein DprA Machinery gene
  NMD50_RS02295 (NMD50_02290) smg 467583..468056 (+) 474 WP_000460680.1 DUF494 family protein Smg -
  NMD50_RS02300 (NMD50_02295) yrdD 468085..468627 (+) 543 WP_001129722.1 type I DNA topoisomerase -
  NMD50_RS02305 (NMD50_02300) tsaC 468632..469204 (+) 573 WP_001301412.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  NMD50_RS02310 (NMD50_02305) aroE 469209..470027 (+) 819 WP_000451243.1 shikimate dehydrogenase -
  NMD50_RS02315 (NMD50_02310) yrdB 470024..470281 (+) 258 WP_001070563.1 DUF1488 domain-containing protein -
  NMD50_RS02320 (NMD50_02315) yrdA 470257..470811 (-) 555 WP_001286216.1 gamma carbonic anhydrase family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 41119.08 Da        Isoelectric Point: 6.1811

>NTDB_id=606937 NMD50_RS02290 WP_370602840.1 466487..467611(+) (dprA) [Escherichia coli strain ET734]
MVDTEIWLRLMSISSLYGDDMVRIAHWVAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLAASLLEQGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQDAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDE
VTPVDVVAERAYQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=606937 NMD50_RS02290 WP_370602840.1 466487..467611(+) (dprA) [Escherichia coli strain ET734]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGTATCAGCAGCTTGTACGGCGATGATATGGTCCGTATCGCTCACTG
GGTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCACGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATTCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTAGCGCATAAAGCAGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCCCGCCGTCATGCCCGACTGGCTGCCAGTCTGCT
TGAACAGGGGGGCGCTCTCGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGTAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGAGAAGTTTTTGCCTTGCCAGGTCCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGATGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGCAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAGCGTGCTTACCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (WHD_DprA)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

47.967

98.663

0.473
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

49.032

82.888

0.406
  dprA Vibrio cholerae strain A1552

49.032

82.888

0.406
  dprA Haemophilus influenzae Rd KW20

44.807

90.107

0.404
  dprA Glaesserella parasuis strain SC1401

44.51

90.107

0.401
  dprA Legionella pneumophila strain ERS1305867

43.636

88.235

0.385