Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   LA341_RS10295 Genome accession   NZ_CP083626
Coordinates   2291486..2291806 (+) Length   106 a.a.
NCBI ID   WP_026455883.1    Uniprot ID   A0AAU6TAA5
Organism   Aeromonas enteropelogenes strain FDAARGOS_1509     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2286486..2296806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA341_RS10280 (LA341_10280) yfbV 2286939..2287379 (-) 441 WP_026455880.1 terminus macrodomain insulation protein YfbV -
  LA341_RS10285 (LA341_10285) - 2287685..2288887 (+) 1203 WP_026455881.1 acetate kinase -
  LA341_RS10290 (LA341_10290) pta 2288940..2291111 (+) 2172 WP_026455882.1 phosphate acetyltransferase -
  LA341_RS10295 (LA341_10295) comE1/comEA 2291486..2291806 (+) 321 WP_026455883.1 ComEA family DNA-binding protein Machinery gene
  LA341_RS10300 (LA341_10300) galU 2291902..2292813 (+) 912 WP_042028773.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LA341_RS10305 (LA341_10305) - 2293027..2294424 (+) 1398 WP_042028771.1 peptide MFS transporter -
  LA341_RS10310 (LA341_10310) - 2294498..2295469 (-) 972 WP_042028768.1 response regulator -
  LA341_RS10315 (LA341_10315) - 2295789..2296475 (+) 687 WP_042028767.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11456.27 Da        Isoelectric Point: 9.6917

>NTDB_id=606769 LA341_RS10295 WP_026455883.1 2291486..2291806(+) (comE1/comEA) [Aeromonas enteropelogenes strain FDAARGOS_1509]
MQIHKFAAVMLLSTLPLFSQPSLAAEQTQTKQTTTTTAAKESGKLNLNTATLAELTTLKGIGEKKAQAILEYREKQGKFT
SVDQLADVTGIGPATLEANRDMMMVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=606769 LA341_RS10295 WP_026455883.1 2291486..2291806(+) (comE1/comEA) [Aeromonas enteropelogenes strain FDAARGOS_1509]
ATGCAGATACACAAGTTCGCCGCCGTGATGTTGCTCTCAACCCTGCCCCTGTTCAGCCAGCCCTCGCTGGCAGCCGAACA
GACGCAGACCAAGCAAACCACTACCACAACCGCCGCCAAGGAGAGTGGCAAACTCAACCTCAATACGGCCACCCTGGCCG
AGCTCACTACCCTCAAGGGTATTGGCGAGAAGAAGGCTCAGGCCATCCTCGAATATCGTGAGAAACAGGGGAAATTTACC
TCTGTAGATCAATTGGCAGATGTCACGGGGATCGGCCCGGCCACGCTGGAAGCCAACAGGGATATGATGATGGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

46.789

100

0.481
  comEA/comE1 Glaesserella parasuis strain SC1401

46.465

93.396

0.434
  comEA Vibrio cholerae C6706

45.055

85.849

0.387
  comEA Vibrio cholerae strain A1552

45.055

85.849

0.387
  comEA Vibrio parahaemolyticus RIMD 2210633

41

94.34

0.387
  comEA/celA/cilE Streptococcus mitis NCTC 12261

47.561

77.358

0.368