Detailed information NTG0060674

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: K748_RS04015
• Genome accession: NC_021882
• Coordinates: 815306..816442 (+)
• Length: 378 a.a.
• NCBI ID: WP_015645817.1
• Uniprot ID: -
• Organism: Helicobacter pylori UM298
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 810306..821442

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K748_RS03980 (K748_05420)	panD	810725..811075 (+)	351	WP_015645812.1	aspartate 1-decarboxylase	-
K748_RS03985 (K748_05425)	-	811086..811379 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
K748_RS03990 (K748_05430)	-	811379..812374 (+)	996	WP_015645813.1	PDZ domain-containing protein	-
K748_RS03995 (K748_05435)	comB6	812382..813437 (+)	1056	WP_015645814.1	P-type conjugative transfer protein TrbL	Machinery gene
K748_RS04000	comB7	813453..813578 (+)	126	WP_020849792.1	hypothetical protein	Machinery gene
K748_RS04005 (K748_05445)	comB8	813575..814318 (+)	744	WP_015645815.1	virB8 family protein	Machinery gene
K748_RS04010 (K748_05450)	comB9	814318..815313 (+)	996	WP_015645816.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
K748_RS04015 (K748_05455)	comB10	815306..816442 (+)	1137	WP_015645817.1	DNA type IV secretion system protein ComB10	Machinery gene
K748_RS04020 (K748_05460)	-	816508..817920 (+)	1413	WP_015645818.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
K748_RS04025 (K748_05465)	gmd	817935..819080 (+)	1146	WP_015645819.1	GDP-mannose 4,6-dehydratase	-
K748_RS04030 (K748_05470)	-	819073..820005 (+)	933	WP_015645820.1	GDP-L-fucose synthase	-
K748_RS04035 (K748_05480)	hypE	820247..821245 (-)	999	WP_015645821.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42032.64 Da
• Isoelectric Point: 9.9924

>NTDB_id=60674 K748_RS04015 WP_015645817.1 815306..816442(+) (comB10) [Helicobacter pylori UM298]
MNKWLKGALVFVGGFATIIAISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEVNSSKEETFKSPLIDLKTNTTSPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=60674 K748_RS04015 WP_015645817.1 815306..816442(+) (comB10) [Helicobacter pylori UM298]
ATGAATAAATGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTATAGCCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAGTGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTCTCATAGATTTAAAAAC
AAACACAACCTCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAATCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	95.503	100	0.955