Detailed information NTG0060670

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: K748_RS03995
• Genome accession: NC_021882
• Coordinates: 812382..813437 (+)
• Length: 351 a.a.
• NCBI ID: WP_015645814.1
• Uniprot ID: -
• Organism: Helicobacter pylori UM298
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 807382..818437

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K748_RS03965 (K748_05405)	-	807805..808218 (+)	414	WP_001023005.1	universal stress protein	-
K748_RS03970 (K748_05410)	-	808238..808513 (+)	276	WP_000784960.1	ATP-dependent Clp protease adaptor ClpS	-
K748_RS03975 (K748_05415)	-	808513..810735 (+)	2223	WP_015645811.1	ATP-dependent Clp protease ATP-binding subunit	-
K748_RS03980 (K748_05420)	panD	810725..811075 (+)	351	WP_015645812.1	aspartate 1-decarboxylase	-
K748_RS03985 (K748_05425)	-	811086..811379 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
K748_RS03990 (K748_05430)	-	811379..812374 (+)	996	WP_015645813.1	PDZ domain-containing protein	-
K748_RS03995 (K748_05435)	comB6	812382..813437 (+)	1056	WP_015645814.1	P-type conjugative transfer protein TrbL	Machinery gene
K748_RS04000	comB7	813453..813578 (+)	126	WP_020849792.1	hypothetical protein	Machinery gene
K748_RS04005 (K748_05445)	comB8	813575..814318 (+)	744	WP_015645815.1	virB8 family protein	Machinery gene
K748_RS04010 (K748_05450)	comB9	814318..815313 (+)	996	WP_015645816.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
K748_RS04015 (K748_05455)	comB10	815306..816442 (+)	1137	WP_015645817.1	DNA type IV secretion system protein ComB10	Machinery gene
K748_RS04020 (K748_05460)	-	816508..817920 (+)	1413	WP_015645818.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39837.79 Da
• Isoelectric Point: 8.8165

>NTDB_id=60670 K748_RS03995 WP_015645814.1 812382..813437(+) (comB6) [Helicobacter pylori UM298]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASVLTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHVQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=60670 K748_RS03995 WP_015645814.1 812382..813437(+) (comB6) [Helicobacter pylori UM298]
ATGAAAAATGACGCTTATGAAATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGTGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGTCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTAG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATGTGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
TCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAATCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.436	100	0.974