Detailed information NTG0060673

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: K748_RS04010
• Genome accession: NC_021882
• Coordinates: 814318..815313 (+)
• Length: 331 a.a.
• NCBI ID: WP_015645816.1
• Uniprot ID: -
• Organism: Helicobacter pylori UM298
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 809318..820313

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K748_RS03980 (K748_05420)	panD	810725..811075 (+)	351	WP_015645812.1	aspartate 1-decarboxylase	-
K748_RS03985 (K748_05425)	-	811086..811379 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
K748_RS03990 (K748_05430)	-	811379..812374 (+)	996	WP_015645813.1	PDZ domain-containing protein	-
K748_RS03995 (K748_05435)	comB6	812382..813437 (+)	1056	WP_015645814.1	P-type conjugative transfer protein TrbL	Machinery gene
K748_RS04000	comB7	813453..813578 (+)	126	WP_020849792.1	hypothetical protein	Machinery gene
K748_RS04005 (K748_05445)	comB8	813575..814318 (+)	744	WP_015645815.1	virB8 family protein	Machinery gene
K748_RS04010 (K748_05450)	comB9	814318..815313 (+)	996	WP_015645816.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
K748_RS04015 (K748_05455)	comB10	815306..816442 (+)	1137	WP_015645817.1	DNA type IV secretion system protein ComB10	Machinery gene
K748_RS04020 (K748_05460)	-	816508..817920 (+)	1413	WP_015645818.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
K748_RS04025 (K748_05465)	gmd	817935..819080 (+)	1146	WP_015645819.1	GDP-mannose 4,6-dehydratase	-
K748_RS04030 (K748_05470)	-	819073..820005 (+)	933	WP_015645820.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 331 a.a.
• Molecular weight: 37973.78 Da
• Isoelectric Point: 9.3712

>NTDB_id=60673 K748_RS04010 WP_015645816.1 814318..815313(+) (comB9) [Helicobacter pylori UM298]
MRKVLCALVGFLLAFSVLKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENALENTLENAPTNNKPLKEEPLKEGKEEAKEKEEETIIIGDNTNAMKIVKKDIQKGYRALKSSQRKW
YCLGICSKKSKLSLMPKEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYL
CIRFVKRGKDE

Nucleotide

• Length: 996 bp

>NTDB_id=60673 K748_RS04010 WP_015645816.1 814318..815313(+) (comB9) [Helicobacter pylori UM298]
ATGCGTAAGGTTTTATGCGCTCTTGTGGGTTTTTTGTTGGCTTTTAGCGTTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCCGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAATAAAGAAAATGCCCTTGAAAATACCCTTGAAAATGCCCCCACAAACAA
CAAGCCCTTAAAAGAAGAACCCTTAAAAGAAGGAAAAGAAGAAGCCAAAGAAAAAGAAGAAGAGACTATAATTATTGGCG
ATAACACTAATGCCATGAAAATCGTTAAAAAAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGG
TATTGTTTAGGGATTTGTTCTAAAAAATCCAAACTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAACAATTCACCTA
TTTCAAATTTGACAAAAAATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGA
ATACTAGGATTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTG
TGTATCCGTTTTGTCAAAAGGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-322)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	93.656	100	0.937