Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LA316_RS20885 Genome accession   NZ_CP083620
Coordinates   4383992..4384522 (-) Length   176 a.a.
NCBI ID   WP_006810470.1    Uniprot ID   -
Organism   Enterobacter bugandensis strain FDAARGOS_1520     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4378992..4389522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA316_RS20860 (LA316_20860) - 4379578..4380249 (-) 672 WP_049137624.1 glutathione S-transferase family protein -
  LA316_RS20865 (LA316_20865) soxR 4380537..4380995 (-) 459 WP_023331806.1 redox-sensitive transcriptional activator SoxR -
  LA316_RS20870 (LA316_20870) soxS 4381094..4381420 (+) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  LA316_RS20875 (LA316_20875) - 4381427..4382992 (-) 1566 WP_028015177.1 EAL domain-containing protein -
  LA316_RS20880 (LA316_20880) - 4383650..4383931 (+) 282 WP_028015176.1 YjcB family protein -
  LA316_RS20885 (LA316_20885) ssb 4383992..4384522 (-) 531 WP_006810470.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LA316_RS20890 (LA316_20890) uvrA 4384774..4387596 (+) 2823 WP_041911534.1 excinuclease ABC subunit UvrA -
  LA316_RS20895 (LA316_20895) - 4387600..4387953 (-) 354 WP_028015174.1 MmcQ/YjbR family DNA-binding protein -
  LA316_RS20900 (LA316_20900) - 4387956..4388372 (-) 417 WP_041911536.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LA316_RS20905 (LA316_20905) aphA 4388485..4389198 (-) 714 WP_041911537.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18892.89 Da        Isoelectric Point: 5.2456

>NTDB_id=606706 LA316_RS20885 WP_006810470.1 4383992..4384522(-) (ssb) [Enterobacter bugandensis strain FDAARGOS_1520]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=606706 LA316_RS20885 WP_006810470.1 4383992..4384522(-) (ssb) [Enterobacter bugandensis strain FDAARGOS_1520]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTAGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGACCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAACCAGCAGCAGGGTGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCT
GCTCCGTCTAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.222

100

0.79
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.597
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.369