Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LA358_RS03180 Genome accession   NZ_CP083612
Coordinates   656511..658025 (-) Length   504 a.a.
NCBI ID   WP_224210783.1    Uniprot ID   -
Organism   Aeromonas enteropelogenes strain FDAARGOS_1536     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 651511..663025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA358_RS03155 (LA358_03155) - 652743..653378 (-) 636 WP_042027151.1 nicotinamidase -
  LA358_RS03160 (LA358_03160) - 653453..654103 (+) 651 WP_042072586.1 NUDIX hydrolase -
  LA358_RS03165 (LA358_03165) - 654100..654576 (+) 477 WP_224210780.1 DUF523 domain-containing protein -
  LA358_RS03170 (LA358_03170) - 654531..655487 (-) 957 WP_224210781.1 acyltransferase -
  LA358_RS03175 (LA358_03175) - 655494..656393 (-) 900 WP_224210782.1 acyltransferase -
  LA358_RS03180 (LA358_03180) comM 656511..658025 (-) 1515 WP_224210783.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LA358_RS03185 (LA358_03185) ilvG 658410..660071 (+) 1662 WP_224210784.1 acetolactate synthase 2 catalytic subunit -
  LA358_RS03190 (LA358_03190) ilvM 660068..660319 (+) 252 WP_005306810.1 acetolactate synthase 2 small subunit -
  LA358_RS03195 (LA358_03195) - 660332..661276 (+) 945 WP_017781281.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54535.42 Da        Isoelectric Point: 7.2611

>NTDB_id=606625 LA358_RS03180 WP_224210783.1 656511..658025(-) (comM) [Aeromonas enteropelogenes strain FDAARGOS_1536]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRERVLAARERMLSRNGKLNNLLDSREIEDICQLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=606625 LA358_RS03180 WP_224210783.1 656511..658025(-) (comM) [Aeromonas enteropelogenes strain FDAARGOS_1536]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCTTAGGTATAGCGGCCCCGCAAGTCACGGTGGAAGTGCACCTCTCCAA
CGGTCTGCCCGCCTTCAACATGGTGGGTCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAGCACATCACGGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGTATTCTCGCCGCTTCCAAGCAGATACCGGCAAAATATCTGCTTGATCACGAATTTTT
GGGGGAACTGGCCCTGACCGGCGAGATCCGCCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGACGCGGGAC
GCACCCTGCTGGTTCCGCGGGAGAACGGCCCCGAGGCCTCGCTGATCCAGGACGCCGAAGTACGCACCGCCCACCAGCTG
CTGGCCGTCACCGCCTGGCTGGCGGGTCAATACGAGTTGCCGCTGCCGGATCCCCAGAGCGCGGAGAGCCTGCCCGACGT
GCCGGACCTGCAGGACGTGATCGGCCAGTCCCAGGCCAAGCGGGCGCTGGAAATCGCCGCAGCCGGAAGCCACAACCTGC
TGTTTATTGGCCCGCCCGGTACTGGCAAGAGCATGCTGGCGAGCCGCCTGCCCGGCATTCTGCCGCCGCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCGCGCGCCGGCCACTGGCACCACAGGCCCTATCG
AACGCCCCACCACAGCGCCTCGGCGGTGGCACTGGTAGGTGGTGGCAGTCACCCGCGTCCCGGCGAAATATCCCTGGCCC
ACAACGGGGTGCTGTTCCTCGACGAGCTGCCTGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGTGAACCGCTGGAGACG
GGCCATATCACCATCAGCCGGGCTGCCCGTCAGGTGGACTTTCCCGCCCGTTTCCAACTGGTCGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGCGACGGTCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTAGGCAAACTCTCCGGCC
CCTTCCTCGACCGCTTCGACCTGACAGTGGAGGTACCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGA
GAGTCGAGCCAACAGATCCGCGAGCGGGTGCTGGCGGCGCGCGAGCGCATGCTGAGTCGCAATGGCAAGCTCAACAACCT
GCTTGATAGCCGTGAAATCGAAGACATTTGCCAATTATCGCCACAGGATGCCGAATTTCTGGAGAACGCCATCCAGAAGC
TCGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTGTCGCGCACCATCGCCGATCTGGCGGGCCAGCCTGCCATC
GGCAAGGAGCACCTGATCGAGGCGCTCGGTTATCGCGCCATGGATCGCCTGCTCTCCAGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Vibrio campbellii strain DS40M4

62.351

99.603

0.621
  comM Haemophilus influenzae Rd KW20

61.858

100

0.621
  comM Glaesserella parasuis strain SC1401

60.947

100

0.613
  comM Legionella pneumophila str. Paris

51.19

100

0.512
  comM Legionella pneumophila strain ERS1305867

51.19

100

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464