Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LAU39_RS07180 Genome accession   NZ_CP083602
Coordinates   1352059..1354449 (-) Length   796 a.a.
NCBI ID   WP_224186537.1    Uniprot ID   -
Organism   Macrococcus armenti strain JEK29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1347059..1359449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAU39_RS07160 (LAU39_07160) - 1348124..1348435 (-) 312 WP_224182870.1 DUF1292 domain-containing protein -
  LAU39_RS07165 (LAU39_07165) ruvX 1348451..1348870 (-) 420 WP_224186535.1 Holliday junction resolvase RuvX -
  LAU39_RS07170 (LAU39_07170) - 1348863..1349108 (-) 246 WP_224188431.1 IreB family regulatory phosphoprotein -
  LAU39_RS07175 (LAU39_07175) alaS 1349188..1351812 (-) 2625 WP_224186536.1 alanine--tRNA ligase -
  LAU39_RS07180 (LAU39_07180) recD2 1352059..1354449 (-) 2391 WP_224186537.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LAU39_RS07185 (LAU39_07185) - 1354452..1355111 (-) 660 WP_224186538.1 tetratricopeptide repeat protein -
  LAU39_RS07190 (LAU39_07190) mnmA 1355211..1356326 (-) 1116 WP_224186539.1 tRNA 2-thiouridine(34) synthase MnmA -
  LAU39_RS07195 (LAU39_07195) - 1356338..1357465 (-) 1128 WP_224186540.1 cysteine desulfurase family protein -
  LAU39_RS07200 (LAU39_07200) - 1357636..1358631 (+) 996 WP_224186541.1 LLM class flavin-dependent oxidoreductase -
  LAU39_RS07205 (LAU39_07205) cymR 1358804..1359226 (-) 423 WP_224185014.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90300.81 Da        Isoelectric Point: 4.6221

>NTDB_id=606523 LAU39_RS07180 WP_224186537.1 1352059..1354449(-) (recD2) [Macrococcus armenti strain JEK29]
MENMTLFEQSFVKGTITRILFYNNDNFYTVLKAEVIESNEDFDDDATITGYLPQIAEGDTYTFTGKVVTHPKYGKQLHAD
KFEKDMPQSRDGIIHYLSSDLFKGVGKKTARTIVEVLGEDALNIILDDKKSLDQIPKLSDEKKDLIYNTIYDNQAIEKIM
IQLNEFGFGPQLAMKIYQFYKEDTLKIINESPYQLVMDIDGIGFNKADELAGKLGIDNNHPERLKAALIFTIEQASIQNG
HTYIPDQVLLETSFNLLMKNGSQVDPDKLVIALTELTEEHKLVNHEKNIYIPSLFYSETKAVQILHRLMNHKDQVKQFEQ
SEVLLAIGELESMFEVSYAERQKDALVTAMNSKLMILTGGPGTGKTTVVRGIVNLYAELHGLSLDYDDYDGQDFPIVVAA
PTGRASKRLQESTGLEATTIHRLIGWTRENKPDDVLETEITAKLVIIDEMSMVDTWLMFQLMKAVPNDAQIIFVGDQDQL
PSVGPGQVFKDMIDAQIMPQIELNEVYRQQEGSSIVELAHQIKRNEPFDISKRYNDRSFIPCSSNQIPEVIEKIVRSAVK
KGYDMRDIQVLAPIYRGPAGIRALNKVLQEILNPNDEKKRELQFGDIYFRTGDKVLQLVNRPEDNVFNGDIGEVTGIFMA
AENALNKDVVIVDFDGSEVTYTKADLMEVTHAYCCSIHKSQGSEFPIVIMPVVNQYFRMLQKNILYTGLTRAKQSLIFCG
DIQAFNEGIKRIGNARFTSFYQFLIDYFNTEDEDNTHDKRSGNALPFNVGEMTENNMHLVDPMINMGEISPYDFMS

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=606523 LAU39_RS07180 WP_224186537.1 1352059..1354449(-) (recD2) [Macrococcus armenti strain JEK29]
TTGGAAAATATGACTTTGTTTGAGCAATCCTTTGTTAAAGGGACAATAACGAGAATATTATTTTATAACAATGATAATTT
CTATACTGTGCTAAAAGCAGAAGTGATTGAATCAAACGAAGATTTCGATGATGATGCTACGATTACAGGTTATCTCCCAC
AAATTGCTGAAGGTGATACATATACGTTCACAGGTAAAGTTGTCACGCATCCGAAGTACGGTAAACAACTTCACGCTGAT
AAATTTGAGAAGGATATGCCTCAGTCGCGTGACGGTATTATCCATTATTTATCGAGTGATTTGTTTAAAGGTGTCGGTAA
GAAAACGGCAAGAACGATTGTTGAAGTGCTCGGAGAAGATGCATTAAACATCATTCTTGATGATAAAAAGAGTCTTGACC
AAATCCCAAAGTTATCTGATGAGAAAAAGGATTTAATATATAATACGATTTATGACAATCAGGCAATTGAGAAAATTATG
ATTCAGCTGAATGAATTTGGCTTCGGGCCACAGCTTGCGATGAAGATTTATCAGTTTTATAAGGAAGATACATTAAAAAT
CATTAATGAATCCCCGTATCAGCTCGTCATGGATATTGACGGTATCGGGTTTAATAAGGCAGATGAACTAGCAGGCAAAC
TAGGTATTGATAACAATCATCCCGAACGTCTGAAAGCAGCACTGATTTTTACGATTGAACAAGCTTCAATTCAAAATGGA
CATACTTATATTCCAGATCAAGTATTACTTGAAACGAGCTTTAATTTACTGATGAAAAACGGTAGTCAAGTTGATCCCGA
CAAGCTCGTAATTGCACTTACTGAGCTGACTGAAGAACACAAACTTGTTAATCATGAAAAGAACATTTATATTCCGAGTC
TCTTTTACTCTGAAACGAAAGCTGTCCAGATATTGCATCGATTAATGAATCATAAAGATCAAGTTAAGCAGTTTGAACAG
TCTGAAGTGCTGCTTGCAATCGGGGAACTGGAATCAATGTTTGAAGTAAGTTATGCAGAACGTCAGAAAGATGCGCTCGT
TACTGCAATGAATTCAAAACTGATGATTTTAACAGGAGGACCTGGTACAGGGAAAACGACGGTCGTGCGTGGTATCGTTA
ATTTATATGCTGAGCTTCATGGCTTAAGCCTTGATTATGATGATTATGATGGACAGGATTTCCCAATTGTAGTTGCAGCA
CCTACAGGTCGCGCTTCAAAGCGTCTTCAGGAATCAACAGGACTTGAAGCGACGACAATACATAGATTAATTGGCTGGAC
GAGAGAGAATAAACCTGATGATGTTCTTGAAACTGAGATAACAGCGAAGCTCGTCATTATTGATGAAATGTCGATGGTCG
ATACGTGGCTTATGTTTCAGCTTATGAAAGCAGTGCCAAACGATGCACAAATTATATTTGTCGGTGACCAGGACCAGTTA
CCTTCAGTCGGACCAGGACAAGTATTTAAAGATATGATTGATGCACAAATTATGCCGCAAATTGAACTGAATGAAGTGTA
CCGACAGCAGGAAGGCTCATCTATCGTTGAGCTTGCGCATCAAATTAAACGTAATGAGCCGTTTGATATTTCGAAGCGTT
ATAATGATAGAAGTTTTATACCGTGCTCAAGCAATCAAATTCCAGAAGTAATAGAGAAAATTGTACGCAGTGCAGTAAAA
AAAGGATATGATATGCGCGATATACAAGTTCTCGCGCCGATATACAGAGGACCAGCCGGTATACGAGCATTGAATAAAGT
GCTGCAGGAAATATTAAATCCGAATGATGAGAAAAAGCGTGAACTGCAGTTTGGCGACATATATTTCAGAACTGGTGATA
AAGTACTGCAACTCGTCAATCGACCAGAGGACAATGTGTTTAACGGAGATATCGGTGAAGTGACAGGTATTTTTATGGCA
GCAGAAAATGCGCTCAATAAAGATGTTGTAATTGTTGATTTTGACGGAAGTGAAGTAACATATACGAAAGCAGATTTAAT
GGAAGTTACGCACGCTTACTGCTGTTCTATCCATAAATCTCAAGGATCAGAATTCCCGATTGTAATTATGCCGGTCGTCA
ATCAGTACTTTAGAATGTTACAGAAAAACATACTGTATACTGGATTAACACGCGCAAAGCAATCGCTTATATTTTGTGGT
GATATACAGGCGTTTAATGAAGGAATTAAACGTATCGGAAACGCTAGATTTACGAGTTTCTATCAGTTTCTGATAGATTA
TTTCAATACTGAAGATGAAGATAATACTCATGATAAACGAAGTGGAAATGCACTACCGTTTAATGTCGGTGAGATGACAG
AAAACAATATGCACCTTGTTGATCCGATGATTAATATGGGGGAAATTTCACCATATGATTTTATGAGTTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-718)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-654)

AAA domain (AAA_30)

(338-544)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.811

100

0.511